Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6290 ATGTCGTACCCATTGTTCCTCGTCGTGGTTCTGTTTTCTCTCTCACTGTTTTCTACAACTTTCTCTCTCAACCAAGATGGTCTCTTCCTCCTTCAAGCTAAACTTCATCTCTCCGACCCTTCTAATTCTCTCTCCAACTGGAACCCCCGCGACCCCACTCCCTGCAACTGGACCGGCATCCTCTGTAACAATCTCACCGCCGCCGTCACCTCCATCAACCTCCCTGACTCCGACCTCTCCGGTCCCTTCCCCACTTCCCTCTGCCGTCTAACTTCTCTCTCATATCTCTCTCTCCCCAACAACAATCTCAACTCCACCCTCCCTTCTGCTATCTCCACCTGCACCACCCTCCGCCATCTCAATCTCTCCCTCAACCTCTTCTCCGGTCAAATCCCAGACACGCTCTCCAACCTCCCCTTCCTCCAAATCCTCGACCTCTCCTTCAACAACTTCTCCGGCAACATCCCTCCAACGTTCAGCCATTTCCAACAACTCCAAACTCTCTCCCTTATCAACAACCTTTTCACCGGAACAATTCCTTCCTCTCTCGGAAACATCTCATCTCTCAAACGACTTCACCTCGCTTACAATAGCTTCCTCGCTCAAGGTCCAATCCCAAGCGAATTCGGAAGCATCATCAACCTTGAAACTCTATGGCTCTCTGGTTGCAACCTTGTGGGTCCCATTCCCGATTCTCTTCGTAAACTCGTTCATCTTAAGGACCTCGACTTGTCGCGAAACATGCTCAACGGAACTATACCGGAAACTGTGATATCCAGTTTAACCAGCATTGTTCAAATCGAGCTTTACCAGAACTCTTTCTCCGGCGAGTTGCCGCGGGTCGGTTTATCCAACTTGACTCGGTTGGAACGTTTCGATGCTTCGGAGAACGACCTGACGGGGACGATTCCCGACGAGCTGTGTCGGCTGAAGAATCTTGGGTCTCTTAATTTGTACAATAATCGACTCGAGGGCTCTCTGCCAGAGAGTTTGGCTTCGTCGGAGAAGTTATACGTGCTTCTTTTGTTCAACAACACACTCTCCGGGAATTTGCCGAGTGGTTTGGGGAGCAAGTCGAGGTTACAGATGCTTGATGTTTCGTTTAATCGATTCACCGGCGAGATTCCGGCGAGTATTTGCCATCAAGGAACGTTGCAGGAGTTGTTGATGATTCACAATTCATTTTCCGGGGAAATCCCAGAGAGTCTTGGAAGCTGTTTGAGCTTAACTAGGGTTAGGCTTGGGAACAATAATCTCTCTGGTGTTGTTCCTTCTGGTCTTTGGGGTTTGCCCCATGTGTATCTACTTGAGCTTGTTGAGAATTCTCTTTCCGGGTCAATTTCTAATGCAATTTCAAGAGCGACCAATCTTTCAACTCTGTTAATTTCAGGGAATAGGCTTAATGGGTCGATTCCCGATTCAATCGGGTCGTTGAATAATCTCGAAGTGTTTGTTGCTAGCAGTAATAGTCTTACCGGTCAGATTCCGATCAGCATGGTTAAGTTAAACCAGTTGGGCAGGCTTGTTCTTAGAGATAATCAAATTTCTGGAGAGATTCCTCATGGGGTTGGTGATTGGGAGAAGCTCAATGAGCTCGATTTAGCAAATAATAGATTTGTCGGTAATATTCCAAGTGAACTAGGAACGTTGCCGGGGCTTAACTTTCTTGATCTTTCTGGTAACTTCCTTTCCGGTGAAATTCCAATGGAGCTGCAAAATTTGAAGCTTAATTTTTTTAATCTGTCGAATAACCAGTTATCAGGGAAAATTCCACCTCTTTATGCTAATGAGAATTTTAAGGACAGTTTTGTAGGAAATACTGGCCTATGCGGCGATATCTCTGGATTGTGTCCGAATTTGGTTGAGAAGAGTAAGAATAAGAACCTTGTGTGGGTTTTCAGGTTCATCTTTGTACTTGCTGGTGTTGTGTTAATTGTTGGGGTGACTTGGTTTTACTTCAAATTCCGGGATTTCAAGAAGACGAAGAAAGGATTTCATATGTCGAAATGGAGGTCATTTCATAAAATAGGGTTTAGTAAGTTTGAGATTGTTAAACTGATGAGTGAAGATAACGTGATAGGGAAAGGATCTTCCGGGAAGGTTTACAAAGTGGTGCTGAGTAACGGAGAGACAGTAGCGGTGAAGAAACTGTGGGGAGCAAAGAAGACGGAAAATGGAAATGTTGATGATCCTGAAAAGGATGGATTTGAAGTCGAAGTTGAAACATTAGGAAAGATTAGGCACAAGAATATCGTAAGGCTATGGTGTTGTTACAACAACGGTGATAGTAAGCTTCTAGTTTACGAGTACATGCCAAACGGAAGCATTGCTGATTTTTTGCATAGTAGCAAGAAAAAGTTCTTGGATTGGTCAACTAGACTTAAAATCGCTATCGATGCTGCCGAAGGACTCTCTTATTTGCATCATGATTGTGTTGTTCCTATTGTTCACAGGGATGTAAAATCTAGTAACATTTTGCTAGATGAAGAATTTGGTGCGAAAATTGCTGATTTTGGAGTTGCTAAATTTGTTAGAGGTGTCATCAATGGGACAGAAGAACCAATGTCTATTATTGCAGGTTCTTACGGTTACATTGCACCAGAATATGCTTACACTCTTAGGGTGAATGAAAAGAGTGACATTTATAGTTTCGGTGTAGTGATTTTGGAGTTGGTAACTGGAAAACAACCTATTGATCAAGAGTATGGAGAAAAAGATTTGGTTAAATGGGTTTCTTCGAAGTTGAACGAGGAAGAACTGGATCAGGTGATTGATCAAACTCTTGATTATTCCAAATACGAGGAAGAAATAAACAAAGTACTCAAGTTGGGAATTCTCTGCACAAGCTCTCTTCCTATAAACCGTCCTTCAATGAGAAGTGTGGTGAAAATGCTGCATGAAGTAGCGTCAGTTGCCAAATCCAGCAGTGGAAGATTGTCTCCTTACTATCAAGAAGTGGTCTCTGACAATGATCATTAG 2979 0.4381 MSYPLFLVVVLFSLSLFSTTFSLNQDGLFLLQAKLHLSDPSNSLSNWNPRDPTPCNWTGILCNNLTAAVTSINLPDSDLSGPFPTSLCRLTSLSYLSLPNNNLNSTLPSAISTCTTLRHLNLSLNLFSGQIPDTLSNLPFLQILDLSFNNFSGNIPPTFSHFQQLQTLSLINNLFTGTIPSSLGNISSLKRLHLAYNSFLAQGPIPSEFGSIINLETLWLSGCNLVGPIPDSLRKLVHLKDLDLSRNMLNGTIPETVISSLTSIVQIELYQNSFSGELPRVGLSNLTRLERFDASENDLTGTIPDELCRLKNLGSLNLYNNRLEGSLPESLASSEKLYVLLLFNNTLSGNLPSGLGSKSRLQMLDVSFNRFTGEIPASICHQGTLQELLMIHNSFSGEIPESLGSCLSLTRVRLGNNNLSGVVPSGLWGLPHVYLLELVENSLSGSISNAISRATNLSTLLISGNRLNGSIPDSIGSLNNLEVFVASSNSLTGQIPISMVKLNQLGRLVLRDNQISGEIPHGVGDWEKLNELDLANNRFVGNIPSELGTLPGLNFLDLSGNFLSGEIPMELQNLKLNFFNLSNNQLSGKIPPLYANENFKDSFVGNTGLCGDISGLCPNLVEKSKNKNLVWVFRFIFVLAGVVLIVGVTWFYFKFRDFKKTKKGFHMSKWRSFHKIGFSKFEIVKLMSEDNVIGKGSSGKVYKVVLSNGETVAVKKLWGAKKTENGNVDDPEKDGFEVEVETLGKIRHKNIVRLWCCYNNGDSKLLVYEYMPNGSIADFLHSSKKKFLDWSTRLKIAIDAAEGLSYLHHDCVVPIVHRDVKSSNILLDEEFGAKIADFGVAKFVRGVINGTEEPMSIIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKQPIDQEYGEKDLVKWVSSKLNEEELDQVIDQTLDYSKYEEEINKVLKLGILCTSSLPINRPSMRSVVKMLHEVASVAKSSSGRLSPYYQEVVSDNDH* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6290 992 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Psa5g6290 992 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Psa5g6290 992 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Psa5g6290 992 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Psa5g6290 992 Gene3D Phosphorylase Kinase; domain 1 670 770 - -
Psa5g6290 992 Gene3D Ribonuclease Inhibitor 360 627 IPR032675 -
Psa5g6290 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Psa5g6290 992 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 976 - -
Psa5g6290 992 Gene3D Ribonuclease Inhibitor 281 359 IPR032675 -
Psa5g6290 992 Gene3D Transferase(Phosphotransferase) domain 1 771 982 - -
Psa5g6290 992 SMART serkin_6 687 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6290 992 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Psa5g6290 992 Pfam Protein kinase domain 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6290 992 ProSiteProfiles Protein kinase domain profile. 687 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6290 992 SMART LRR_typ_2 90 114 IPR003591 -
Psa5g6290 992 SMART LRR_typ_2 138 161 IPR003591 -
Psa5g6290 992 SMART LRR_typ_2 310 333 IPR003591 -
Psa5g6290 992 SMART LRR_typ_2 236 260 IPR003591 -
Psa5g6290 992 SMART LRR_typ_2 502 526 IPR003591 -
Psa5g6290 992 SUPERFAMILY L domain-like 38 375 - -
Psa5g6290 992 SUPERFAMILY Protein kinase-like (PK-like) 687 965 IPR011009 -
Psa5g6290 992 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 976 - -
Psa5g6290 992 SUPERFAMILY RNI-like 283 591 - -
Psa5g6290 992 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6290 Psa-Chr5 535564865 535569014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6290 19 989 Receptor kinase-like Gene Family AT1G28440 57.634 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa5g6290 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6290 - - gmx:100778128 1290.79