Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6288 ATGCTAGCTGTATCACCATTGATGAGTGCAAGAGATGAGAGCCAAAGAGAGATGGAGGAGAGTTTATCGATTGAAACATGTGATTTTGCTGATCTTTCTGAAGGGACTTTATTGGAAAGCATCAATTTCGAATTCGACGATGATTTCTTCGTGTGCTTCGACGATGGAGACGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCCGAGTTCTCGCTCAGCGGCGGGGAGGAGTCGGAGATGAATTCTTCAATAACGGTTGTGGATAATAACAAGTTTTGTGAAGGTGGGAATATAGTTTGTGTTGAGAAAAAATTTGAAGAGGAAGAGAAAGCAGGTTCTTCTTCGGATTCGGGTTCGGGTTCGGGTTCGAGCCGGGGGGAGGAGATTGTTAGCAGAAGAGATGAGTCTGTGGTGGTGAATCCAGTGGATTGGACCCCGGAATTGCACCGAAGATTTGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTAGAAATCATGGGAATTGACTGTCTTACTCGCCACAACATCGCAAGCCACCTTCAAAAATATAGATCTCATAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCTGCAAGCTGGACTCACCGGAGGCAATTGTCTTGCAAGAGAGATGTGAGTTTGAACCATTGGGTTGCACCAACTATGGGTTTTCCGCCTATGACTCCACCAGTGCACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCATGGATCAGTCCTTTATGCAGATGTGGCCTAATTATTCGCCGCACCATCCACCGCCTAATTGGGTGCCTCCACGGCCAGCTCCGCCTCCTAATACTCCGTACTGGCACCAACGAACTCAGAATACACCAACCGCAGGAACACCGTGCTTTCCACAGCCTCTGACAACAACGAGATTTGCCTCTCCAACTGTTCCGGGCATTCCTCCACCACACCCCATGTACCAAGTAGATCCCGGCATGGCCGTCACCGCCGCTCAACCATCTCCTCCGCCACACTTAGACTTCCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTATTATCAAAACCATACTTACCATTGCCACTTGGTCTTAAAGCTCCTGCACTTGAAGGTGTGATGGGTGAGTTACAGAGACAAGGAATTCCGAGAATTCCACCCTCTTGTGCTTGA 1200 0.4833 MLAVSPLMSARDESQREMEESLSIETCDFADLSEGTLLESINFEFDDDFFVCFDDGDVLPDLEMDPEMLAEFSLSGGEESEMNSSITVVDNNKFCEGGNIVCVEKKFEEEEKAGSSSDSGSGSGSSRGEEIVSRRDESVVVNPVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWTHRRQLSCKRDVSLNHWVAPTMGFPPMTPPVHHFRPLHVWGHHPMDQSFMQMWPNYSPHHPPPNWVPPRPAPPPNTPYWHQRTQNTPTAGTPCFPQPLTTTRFASPTVPGIPPPHPMYQVDPGMAVTAAQPSPPPHLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQRQGIPRIPPSCA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6288 399 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 144 - -
Psa5g6288 399 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 144 399 - -
Psa5g6288 399 MobiDBLite consensus disorder prediction 111 134 - -
Psa5g6288 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 197 IPR017930 -
Psa5g6288 399 Gene3D - 142 199 - -
Psa5g6288 399 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 195 IPR006447 GO:0003677
Psa5g6288 399 PANTHER TRANSCRIPTION ACTIVATOR GLK1 144 399 IPR044825 GO:0003700|GO:0045893
Psa5g6288 399 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 144 IPR044825 GO:0003700|GO:0045893
Psa5g6288 399 Pfam Myb-like DNA-binding domain 145 193 IPR001005 -
Psa5g6288 399 SUPERFAMILY Homeodomain-like 143 198 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6288 Psa-Chr5 535122345 535124914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6288 1 305 G2-like Transcription Factor Family AT5G44190 39.339 1.16e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa5g6288 Myb_DNA-binding 7.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6288 - - gmx:100775671 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6288 5 535122345 535124914 Psa5g6288 5 535122345 535124914 ECH
Psa7g3848 7 320638803 320641730 Psa5g6288 5 535122345 535124914 PCT