Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6284 ATGGCTTCGTTATTCAAGGATCCCGCGAAGCTCTCGGCATACCGAGACAGAAGGTTCCCTGGAAATCAAGAAGAGTTTGAGCATGCTTTGATAACTTCATCGACCGTTTATGTTGGGAACATGTCGTTTTACACTACCGAAGAGCAAATTTATGAACTGTTTTCTCGAGCTGGTGAAATTAAAAAGATCATCATGGGTTTGGATAAGAACACTAAAACTCCCTGCGGTTTTTGCTTCGTTTTGTATTACTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGTGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGATGGGAGACAATGGGGTCGCGGTCGTAGTGGTGGCCAGGTGCGTGATGAATATCGCACTGATTATGATCCAGGTAGGGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTACGGCACTGGTTCTTTGGGAACTTTTCCTCCAGTTATTCCTTCTTATGGTAGACATGGTGGTGGTCATGGTCACGGTGGTGGCCATGGTCATGGTGGTGGCCATCGGCATGGTAGAGATTACCATAGGAAGAGATACAGAGACGATGACCGCCACACAACACACGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGGGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGACGGGGTTAA 780 0.4564 MASLFKDPAKLSAYRDRRFPGNQEEFEHALITSSTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGTFPPVIPSYGRHGGGHGHGGGHGHGGGHRHGRDYHRKRYRDDDRHTTHEPSKRTSDHESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6284 259 CDD RRM_NCBP2 36 113 IPR034148 -
Psa5g6284 259 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 214 - -
Psa5g6284 259 MobiDBLite consensus disorder prediction 204 259 - -
Psa5g6284 259 Gene3D - 6 150 IPR012677 -
Psa5g6284 259 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 214 IPR027157 GO:0000339|GO:0005846|GO:0045292
Psa5g6284 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Psa5g6284 259 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Psa5g6284 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Psa5g6284 259 SMART rrm1_1 35 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6284 Psa-Chr5 534554116 534559090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6284 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 26.667 1.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6284 K12883 - gmx:100776217 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6284 5 534554116 534559090 Psa5g6284 5 534554116 534559090 ECH