Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6281 ATGCCAGCCCAGAAGCGTTCCTTACCCGAGTCAATGGACGAAGAAGAAACTTCACAGCATCTTCACTATTCTCGCCATGTTAAGCATCAACCGAACCACCGCGACCCAAACTTCATCGACCAACAGCATCAACTCGAACAAGAGGAAGATGAAGAAGACGATGATGATCAGCAAGAGCACGATGAGGAGGAGGAGGAGCAAGGGGAAGAAGATGAAGATGAAGAAGAGGCTGAAGATGATGATGAAGATGAAGATGAAGAAGGGCAGCACCATAACGACGATAAGGAAAAATCACAGGATTCCGACGAAACCCCATCTTCTGACTCTGAAGAAAAACCTGAGTATGTGTACGTAGAACTTTCGGATATTCGTAAAGATGTCCAATGCCCAATTTGCCTTGGTATCATTAAGAAAACAAGAACTGTCATGGAATGCTTGCATCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCTCTGCGAGATGATCCAAACTATGATGCTCTTATTGCTACTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAAGAAAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAGCGGCAATCTGAAGCACTGACCAAAAGACGTAAAGATAATACACCGAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAATCCAGGAGACAAAACCAAGTTGCTGATATTCAAGGATCTGAAGAAAACGAGGAGGAAAATGGCAACAATGAAAAGGACTCATCTTCCGGTGACGAGCGTGGTACAGAACTCCGACAGAGAAAACGAAGGAGATGGACCAGAGTTCGCTCCTCTCAGCCCTCGTCATCAATGGCAAGTCCTGATGGCGGAAGTGTAGAAAGTGATTTGGATATAAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTGACAAAGCCTAGGAAGCTTACTTGGGGAAGAGGTGGTTTTAGAAGTAACACAAGACATGGCAGTGGTGGTGGTAGCAACAGCAAAAATTCTCGCAGTGGCCGAATGTCTAGATTGGTTGATTATCTCAAAAGCTTGAATGAAAACACCGATGAGTTTGATGTTCATCTCATGTTTGTTTCTCCGGACAAAGAAGCTCCGACACCACGTTTGGAGCAGCTTCACCTATGTTGTCGACCAACTTTGTCTGTCAAGAACCTCTATGAATATGTTGCTAGTCAGACACCGTTGACAGTTGAAGAAGTTGAGATACTGGCGGTAAAAGGATGCAGCAGTTTAAACCGCGACGACAAGTCAGCTGATGAGAAATCAGCCGCTGAATGTGATGAGCTAACATCGCTGGTTATAGATCCACAAAAAGATGAATTGGAACTTCTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAATCTATATCCAAAAGGGGGCATTTGATTCTGGCATATAAGAGGAAGGTGTAG 1533 0.4403 MPAQKRSLPESMDEEETSQHLHYSRHVKHQPNHRDPNFIDQQHQLEQEEDEEDDDDQQEHDEEEEEQGEEDEDEEEAEDDDEDEDEEGQHHNDDKEKSQDSDETPSSDSEEKPEYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALTKRRKDNTPSSFVTRSQRNQRNLQSRRQNQVADIQGSEENEEENGNNEKDSSSGDERGTELRQRKRRRWTRVRSSQPSSSMASPDGGSVESDLDISRENRGISRQVTKPRKLTWGRGGFRSNTRHGSGGGSNSKNSRSGRMSRLVDYLKSLNENTDEFDVHLMFVSPDKEAPTPRLEQLHLCCRPTLSVKNLYEYVASQTPLTVEEVEILAVKGCSSLNRDDKSADEKSAAECDELTSLVIDPQKDELELLQAHETVAEIRSKSISKRGHLILAYKRKV* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6281 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 199 IPR013083 -
Psa5g6281 510 ProSiteProfiles Zinc finger RING-type profile. 129 169 IPR001841 -
Psa5g6281 510 Coils Coil 195 218 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 322 336 - -
Psa5g6281 510 Coils Coil 45 80 - -
Psa5g6281 510 PANTHER OS11G0578200 PROTEIN 1 509 IPR044592 -
Psa5g6281 510 SMART ring_2 129 168 IPR001841 -
Psa5g6281 510 MobiDBLite consensus disorder prediction 241 266 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 45 89 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 1 114 - -
Psa5g6281 510 Pfam Zinc finger, C3HC4 type (RING finger) 128 168 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 8 23 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 227 371 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 277 294 - -
Psa5g6281 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 509 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 355 371 - -
Psa5g6281 510 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Psa5g6281 510 CDD RING-HC_RING1_like 129 169 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 30 44 - -
Psa5g6281 510 MobiDBLite consensus disorder prediction 90 114 - -
Psa5g6281 510 SUPERFAMILY RING/U-box 115 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6281 Psa-Chr5 534228023 534232875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6281 127 298 C3H Transcription Factor Family AT2G30580 26.882 1.26e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6281 K10695 - gmx:100776547 588.956