Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6279 ATGAGTACTATTTGTGATGAGCAACAAAACCACAAGTTTCCTTCTTCTTACCAACCTCTCTCTCCCAAAAAACCTCTTAGAGAAATCGATATCCCTCCGAGAAAACTACTCACCCGCCGCACCACCGTCGCTGACATGTTCTCCGATGATACTATCCTTCAAAAATATCTCCCTCACAATGACTCTGACTCGGACTCCGACGATCCTTACTCTTCCGACCATTTCCGCATGTATGAATTCAAAGTCCGGCGATGCACTCGTAGCCGGAGTCACGACTGGACTGACTGTCCATTCGCACACCCCGGCGAGAAAGCACGCCGCCGTGATCCACGAAGGTTTCATTACTCAGGGAATGTTTGTCCTGAGTATCGTCGCGGTGGCTGTAACCGCGGCGATTCTTGTGAGTTTGCTCACGGTGTTTTTGAATGCTGGCTTCATCCGGCTAGGTACAGAACAGAAGCTTGCAAAGATGGGAAAAACTGTAAGAGAAAAATTTGTTTTTTCGCACACACTCCTCGTCAGTTAAGAATCCTTCCGGTAACTTCTTCAAATTCAAATGAACAATTCTCATGCAACAAGAAAAATAATAAGCTTTTGAATAACCATGTTGCATCAAAATCAAACCATTGTTGTTTGATTTGTCATTGTGGTGGTAATGGCAATGCTAATAACTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTCTCGCCGCCGGTGTCTCCTCCCGTGTCTCCAATGAAGCCTCAAAATGATGCTTCATGTTCATCTCTCTCACGCTATGGTTCATTGGTCAATAGTAATAATCTTCGTTATAGAGATATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGAAGGTTCATCTTCTTCACTTGTTTCTGGTTTACAGAAACAAAACAACATGGGTTATTTTGACGTTCCTGTTAACTCTGAGGAACAGGTTCAGAAACAGTTTATTGTTTCACCTTCTGCATCTTCTTTTGATCAGCAGCAACAACAGCATTTCAATATTCTTTCACCTTCGATTCAACAGAATTTGACACCATTCAACGATGGTGGTGATAGTAACATAAACATGTTTTTGAGAGATAACAATATCGACAATGATAAGGTTCTTGTCGGTGGTGATGTTCCTGATCTCGGTTGGGTTAATGAGCTTCTGATGTAA 1182 0.4196 MSTICDEQQNHKFPSSYQPLSPKKPLREIDIPPRKLLTRRTTVADMFSDDTILQKYLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGNVCPEYRRGGCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKICFFAHTPRQLRILPVTSSNSNEQFSCNKKNNKLLNNHVASKSNHCCLICHCGGNGNANNSPTSTLFGMSHFSPPVSPPVSPMKPQNDASCSSLSRYGSLVNSNNLRYRDMLIDLLGSFEGMNFNEGSSSSLVSGLQKQNNMGYFDVPVNSEEQVQKQFIVSPSASSFDQQQQQHFNILSPSIQQNLTPFNDGGDSNINMFLRDNNIDNDKVLVGGDVPDLGWVNELLM* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6279 393 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Psa5g6279 393 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Psa5g6279 393 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Psa5g6279 393 MobiDBLite consensus disorder prediction 1 25 - -
Psa5g6279 393 Gene3D - 114 177 - -
Psa5g6279 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Psa5g6279 393 MobiDBLite consensus disorder prediction 1 17 - -
Psa5g6279 393 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 392 - -
Psa5g6279 393 PANTHER UNKEMPT FAMILY MEMBER 28 392 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6279 Psa-Chr5 534186320 534188214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6279 67 176 C2H2 Transcription Factor Family AT5G07500 68.182 3.91e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g6279 zf-CCCH 2.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6279 K23047 - gmx:100801371 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6279 5 534186320 534188214 Psa5g6279 5 534186320 534188214 ECH