Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6267 ATGGATCCCTATCAACCAGCCGGTCAACCTTGTTCTTCAACAAAACTCGAAAGAAAAATTGTCGAGAAAAATAGGAGAATTAAGATGAAGATTCTCTGTTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAAGCTTTACCACTAATAGATCAAATAGACGATGCTATAAATTACATAAAGAGCTTAGAGACAAATTTGAAATTGGCGAAGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATCACGTAGTGGCTGTTCGAGTTCTTCTGGAGTAAAAGGAAGCATGAAATCACCAAATATTGAGATCCATGAAAATGGTTCTTCTCTACAAGTCATTGTAACATGTGGGGTTGATGATAAGTTCATTTTCTATGAAATTATAAGAATACTGCATGAAGATCACGTGGAGGTCATCTCATCAAACTCTTCAATGATAGGAGATTCAGTTATTCATGTGGTGCATGCAGAGATTCTGCAATCTTTGTTACAATTTGGAGCAACCAAAGTAAGTGAGAGATTGAAAATGTTTGTAAATGGATTAGTGAGAGAGGTGCAAATAGAGCCTCCACTGTGGAATTTTGAGATTGGAACCGAGAATTGGGAGCTAAGTTCTATAGTAAACAAGTGTTTACCAGATTCTTTATGA 657 0.3638 MDPYQPAGQPCSSTKLERKIVEKNRRIKMKILCSKLNSLLPNYNPKEALPLIDQIDDAINYIKSLETNLKLAKEKKESLMRSKRSRSGCSSSSGVKGSMKSPNIEIHENGSSLQVIVTCGVDDKFIFYEIIRILHEDHVEVISSNSSMIGDSVIHVVHAEILQSLLQFGATKVSERLKMFVNGLVREVQIEPPLWNFEIGTENWELSSIVNKCLPDSL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6267 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 84 IPR036638 GO:0046983
Psa5g6267 218 MobiDBLite consensus disorder prediction 84 99 - -
Psa5g6267 218 Gene3D - 11 89 IPR036638 GO:0046983
Psa5g6267 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Psa5g6267 218 MobiDBLite consensus disorder prediction 76 99 - -
Psa5g6267 218 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 188 - -
Psa5g6267 218 Pfam Helix-loop-helix DNA-binding domain 17 66 IPR011598 GO:0046983
Psa5g6267 218 Coils Coil 55 82 - -
Psa5g6267 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 188 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6267 Psa-Chr5 533622016 533623517 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6267 1 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.629 2.25e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6267 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6267 - - gmx:100805461 251.136