Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6263 ATGGATCACTATGAACCAGGATTTCAACCTTGTTCTTCAACCAAAGTCGAAAGAAAGGTTGTTGAGAAAAATAGAAGAAATAAGATGAAGAGTCTCTTTTCCAACCTCAACTCTCTTTGCCCTAACTATAATCCCAAGAAAGCATTATCGTTACCTGATCAAGTAGACAATGCTATAAACTATATTAAGAGCTTAGAGACAAATTTGAAATTGGCGAAGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATCTAGTAGTGTCTGTTCGAGTTCTTTTGGAGCAAAAGGAAGCATAAAATCACCAAAAGTTGAGATTCATGAAAACGGTTCTTCTCTACAAGTCATTGTAACATGTGCGGTTGATGATAAGTTTAAGTTCATTTTCTATGAAATTATAAGAATACTGCACGAAGATCATGTGGAGGTCATCTCTGCAAATTCTTCAATGGCGGGAGATTCCGTTATTCATGTTGTGCATGCAGAGATTCTGCACTCATTGCTTCAACTTGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAACGAATCTGTGGAAGAGGTGCAAATCGTGCCTCAATTGTGGGATTGTGAGATTGGAAATGAGACTTGGGATCTAAGTTCTATAGTAAACAAGTGTTTACCATATTCGTTATGA 663 0.3695 MDHYEPGFQPCSSTKVERKVVEKNRRNKMKSLFSNLNSLCPNYNPKKALSLPDQVDNAINYIKSLETNLKLAKEKKESLMRSKRSSSVCSSSFGAKGSIKSPKVEIHENGSSLQVIVTCAVDDKFKFIFYEIIRILHEDHVEVISANSSMAGDSVIHVVHAEILHSLLQLGATKVSERLKRFVNESVEEVQIVPQLWDCEIGNETWDLSSIVNKCLPYSL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6263 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 89 IPR036638 GO:0046983
Psa5g6263 220 SMART finulus 19 71 IPR011598 GO:0046983
Psa5g6263 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Psa5g6263 220 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 190 IPR015660 GO:0003700|GO:0006357
Psa5g6263 220 Gene3D - 11 90 IPR036638 GO:0046983
Psa5g6263 220 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Psa5g6263 220 Coils Coil 55 82 - -
Psa5g6263 220 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6263 Psa-Chr5 533544200 533545720 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6263 13 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.569 3.81e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6263 HLH 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6263 - - gmx:100817883 230.72