Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6261 ATGGACCACTATCAACAAAAAGGTCAACCTTGTTGTTCAACAAAAATCGAAAGAAAGATTATTGAGAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTACAATCCCAAGGAAGCTTTACCGTTACCAGATCAGATAGACGAAGCTATAAACTACATTAAGAGCTTAGAGACAAGTTTGAAATCGGCGAAGGAGAAGAAAGAAAGTTTAATGAGAAACAAGAGATCGCGTAGTGGCTGTTCGAGTTCTTCAAGACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACATGTGGGGTTGACGAACAGTTCATTTTCTGTGAAATTATGAGAATACTGCATGAAGATCACGTGGAGGTCATCTCTGTAAATTCTTCACTGGCTGGAGATTCGGTTATTCATGTTGTGCATGCAGAGAATCCGCGGTCATTGTTTCAATTTGGAGAGACCAAAGTAGGTGAGAGATTAAAGAGGTTTGTGAATGGATCTATGAGCAAGGTGCAATTAATAGAGCCTCCATTGTGGGATTTTGAGATTGGAAATGAGACTTGGGATCTAAATTCTATAGTAAACAAGTATTTACCAAATTCTTAA 636 0.3711 MDHYQQKGQPCCSTKIERKIIEKNRRNKMKSLYSKLNSLLPNYNPKEALPLPDQIDEAINYIKSLETSLKSAKEKKESLMRNKRSRSGCSSSSRPKIEIHENGSSLQVIVTCGVDEQFIFCEIMRILHEDHVEVISVNSSLAGDSVIHVVHAENPRSLFQFGETKVGERLKRFVNGSMSKVQLIEPPLWDFEIGNETWDLNSIVNKYLPNS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6261 211 MobiDBLite consensus disorder prediction 73 96 - -
Psa5g6261 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 84 IPR036638 GO:0046983
Psa5g6261 211 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 181 - -
Psa5g6261 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Psa5g6261 211 SMART finulus 19 71 IPR011598 GO:0046983
Psa5g6261 211 Pfam Helix-loop-helix DNA-binding domain 17 66 IPR011598 GO:0046983
Psa5g6261 211 Gene3D - 11 91 IPR036638 GO:0046983
Psa5g6261 211 Coils Coil 55 82 - -
Psa5g6261 211 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6261 Psa-Chr5 533457273 533458668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6261 13 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.754 1.26e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6261 HLH 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6261 - - mtr:MTR_2g090425 249.595