Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6260 ATGGATCATTATCAACCAGGATTTCAACCTTGTTCTTCAACAAAAGTCGAAAGAAAGATTATAGAGAAAAATAGGAGAAATAAGATGAAGACTCTCTGTTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAAGCTTTACCATTACCTGATCAAATAGACAATGCTATAAACTACATTAAGAGCTTAAAGACAAATTTGAAATTGGCAAAGGAGTGGAAAGAAAGTTTAATAAGAAACAACAGATCACGTAGTGGCTGTTCGAGTTCTTCCGGAGCAAAAGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACATGTGGGGTTGACGAACAGTTCATTTTCTGTGAAATTATGAGAATACTGCATGAAGATCACGTGGAGGTCATCTCTGCAAATTCTTCACTGGCTGGAGATTCGGTTATTCATGTTGTGCATGCAGAGAATCCACAGTTATTGTTTCAATTTGGAGCGACCAAAGTAGGCGAGAGAGATTAA 534 0.3652 MDHYQPGFQPCSSTKVERKIIEKNRRNKMKTLCSKLNSLLPNYNPKEALPLPDQIDNAINYIKSLKTNLKLAKEWKESLIRNNRSRSGCSSSSGAKGSIKSPKIEIHENGSSLQVIVTCGVDEQFIFCEIMRILHEDHVEVISANSSLAGDSVIHVVHAENPQLLFQFGATKVGERD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6260 177 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 176 - -
Psa5g6260 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 86 IPR036638 GO:0046983
Psa5g6260 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Psa5g6260 177 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 176 IPR015660 GO:0003700|GO:0006357
Psa5g6260 177 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Psa5g6260 177 Gene3D - 11 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6260 Psa-Chr5 533289169 533290321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6260 13 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.558 5.94e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6260 HLH 5.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6260 - - mtr:MTR_2g090425 229.565