Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6257 ATGGATCGCTATCAACAAATAGGTCAACCTAGTTCTTTACCAAAAGTAGAAAGAAAGGTTGTTGAGAAAAATAGAAGAAATAAGATGAAGAGTCTCTTTTCCAGCCTCAATTCTCTTTGCCCTAACTATAATCCCAAGGAAGCTTTACCATTACCAGATCAAATAGACGAAGCTATAAACTACATTAAGAGCTTAGAGACAAGTTTGAAATCGGCGAAGGAGAAGAAAGAAAGTTTAATTATAAACAAGAGATCGCGTAGTGGCTGTTCGAGTTCTTCAAGAGCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTCTAACATGTGGGGTTGACGAACAGTTTATTTTCTGTGAAATTATGAGAATATTGCATGAAGATTACGTGGAGGTCATCTCTGCAAATTCTTCATTGGCAGGAGATTCAGTTATTCATGTTGTGCATGCAGAGAATCCGCAATCAATGTTTCAATTTGGAGCAACCAAAGTTAGTGAGAGATTGAAAAGGTTTGTGAATGGATCTGAGAGAGAGGTGCAAATTGAGCCTCAGTTGTGGGATTTTGAGAATGGAAATGAGAGTTGGGATCTAAGTTCTATAGTAAACAAGAATTTACAATATTCTTAA 633 0.3602 MDRYQQIGQPSSLPKVERKVVEKNRRNKMKSLFSSLNSLCPNYNPKEALPLPDQIDEAINYIKSLETSLKSAKEKKESLIINKRSRSGCSSSSRAKIEIHENGSSLQVILTCGVDEQFIFCEIMRILHEDYVEVISANSSLAGDSVIHVVHAENPQSMFQFGATKVSERLKRFVNGSEREVQIEPQLWDFENGNESWDLSSIVNKNLQYS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6257 210 Pfam Helix-loop-helix DNA-binding domain 17 66 IPR011598 GO:0046983
Psa5g6257 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Psa5g6257 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 82 IPR036638 GO:0046983
Psa5g6257 210 Gene3D - 11 93 IPR036638 GO:0046983
Psa5g6257 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 181 IPR015660 GO:0003700|GO:0006357
Psa5g6257 210 SMART finulus 19 71 IPR011598 GO:0046983
Psa5g6257 210 Coils Coil 55 82 - -
Psa5g6257 210 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6257 Psa-Chr5 532938094 532939266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6257 16 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.548 1.39e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6257 HLH 7.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6257 - - mtr:MTR_2g090425 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6257 5 532938094 532939266 Psa5g6257 5 532938094 532939266 ECH