Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6253 ATGGCGACAACATGGCAAAGCTGTAAGGACACATACACAATCAGAGGCACCAACAAGATCGTTAGAGCTGGAGACTGTGTTTCGCTACGCCCTACCGTAGCGAGCAAGCCAATCATGGCTCGCGTCGAGAAGATCGAGCTTGATAACTTGAACGGCAAGAGGGTTCATGTGAGATGGTACTATCGACCGGAAGAAGCGATCGGAGGTCGCAGATCGTTTCATGGAGATAAGGAGCTGTTTTTGTCTGATCACTATGATGTTCATCGGGCTGACACCATTGAAGGGAAGTATTATGTGTACTCTTTGAAGAAATACACTAAGCTTGCGACTGTAGGTGCTGAAGATTACTTTTGTAGGTTTCGCTACAAAGTTGCTACCGGGGTTTTTAAACCTCGTCGTGTCCCTGTGTTTTGTAAATGTGAAATGCCTTATAACCCAGATAGGTTTATGGCGAACTGTGAGACATGCAGTGAAAGGTTCCATCCTGAATGTGTGGGCATACCTTTTGAAAAAGCCATGAGAATGCAGGATTTAGGATTTGTTTGTCCTGAATGTTATCCATCTGATTTGGATCATTAG 579 0.4473 MATTWQSCKDTYTIRGTNKIVRAGDCVSLRPTVASKPIMARVEKIELDNLNGKRVHVRWYYRPEEAIGGRRSFHGDKELFLSDHYDVHRADTIEGKYYVYSLKKYTKLATVGAEDYFCRFRYKVATGVFKPRRVPVFCKCEMPYNPDRFMANCETCSERFHPECVGIPFEKAMRMQDLGFVCPECYPSDLDH* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6253 192 Pfam PHD-finger 137 187 IPR019787 -
Psa5g6253 192 Gene3D - 5 130 IPR043151 -
Psa5g6253 192 ProSiteProfiles BAH domain profile. 19 133 IPR001025 GO:0003682
Psa5g6253 192 SMART BAH_4 19 133 IPR001025 GO:0003682
Psa5g6253 192 Pfam BAH domain 21 131 IPR001025 GO:0003682
Psa5g6253 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 191 IPR013083 -
Psa5g6253 192 PANTHER CHROMATIN REMODELING PROTEIN EBS 10 189 - -
Psa5g6253 192 PANTHER OS08G0421900 PROTEIN 10 189 - -
Psa5g6253 192 SUPERFAMILY FYVE/PHD zinc finger 133 188 IPR011011 -
Psa5g6253 192 ProSiteProfiles Zinc finger PHD-type profile. 135 188 IPR019787 -
Psa5g6253 192 SMART PHD_3 137 186 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6253 Psa-Chr5 532168791 532170160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6253 40 130 Core DNA Replication Machinery Family AT4G14700 28.261 1.57e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g6253 BAH 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6253 K25868 - mtr:MTR_2g090365 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6253 5 532168791 532170160 Psa5g6253 5 532168791 532170160 ECH