Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6242 ATGGCTAAGAACAGTGGAAAATTCAACAGGGATTTCGGTGATGAATCTCACAATCACAACAAGTTTACACAAATGGGTGAAAGCCAAGTTAATTGGGAGATTGAAAAGGGAAAAAGTGTTGAATTAAGCGCTTCTCAAAAGCATCACTGGAAGCCCGTTTTTGATGAAGCTTCCGTTTCACATAATAGACCTTTCAAGAAAAGCAAAAGCCCTGAACGTACACAAGTACAGAACAATATTGTTTCGAGTCCGCCGCCGATTTTGTCCCAACAACATCATCAACAGCTTCTTCAGTATTGGAGTGATGCATTGAATCTTAGTCCAAGAGGAAGAATGTTGATGATGATGAACAACAATAACAATAGGTACTTGGGAGGGCAATATGGTAATAATAATAATAACAATGGAGCAATGTTTAGGCCTCAAGCTCAACCTATAAGCACAACAAAACTCTATAGAGGAGTTAGACAACGCCATTGGGGAAAATGGGTTGCCGAAATTCGTCTACCGCGAAATCGAACTCGTCTTTGGTTAGGCACATTTGATACTGCAGAAGATGCTGCTTTAGCCTATGATCGCGAAGCATTCAAGTTAAGAGGAGAGAATGCACGACTCAATTTCCCTGAACTTTTTCTCAACAAAGATAAAGATAAAGATAAAGAAAAAGAAAAAGAAGAAGAAGCAGATTCATCGCCACCTCCAACAACATCAACAACAACAGATTCATCTGTTTCTTGTCCTTCAAGTAACACCGTTACGAAGCAGCCTGAACCTCCGTTGTCGACGCAGACACTTCCAATGGAGGAGTCTAATGAGAATGACTCCGGAATTGAATCGAGTGACGCGAGTCACGTGACGGTGAGTGAAGGAGTTTCAGTTTCACAGTCACAGGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCCATCCCAGCTGGTTGGGGACCAGGCAGTCCTGTTTGGGATGATTTGGATACAAACAACAATCTTAATCTTTTTTCGCAGTCTCAAATTCCATTTTCCAATCTCAACCAACAATCAGAATTCAATGATTTTGATCCTCAGATGGGGTCAAGTTCTTTCATTAGGCCTTTCTACTGGAACAACGATCAGAATTAG 1122 0.41 MAKNSGKFNRDFGDESHNHNKFTQMGESQVNWEIEKGKSVELSASQKHHWKPVFDEASVSHNRPFKKSKSPERTQVQNNIVSSPPPILSQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNNRYLGGQYGNNNNNNGAMFRPQAQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDKEKEKEEEADSSPPPTTSTTTDSSVSCPSSNTVTKQPEPPLSTQTLPMEESNENDSGIESSDASHVTVSEGVSVSQSQELVWSEMSAWFNAIPAGWGPGSPVWDDLDTNNNLNLFSQSQIPFSNLNQQSEFNDFDPQMGSSSFIRPFYWNNDQN* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6242 373 MobiDBLite consensus disorder prediction 1 30 - -
Psa5g6242 373 MobiDBLite consensus disorder prediction 231 290 - -
Psa5g6242 373 MobiDBLite consensus disorder prediction 216 290 - -
Psa5g6242 373 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Psa5g6242 373 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Psa5g6242 373 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Psa5g6242 373 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Psa5g6242 373 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Psa5g6242 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 87 351 - -
Psa5g6242 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 2 78 - -
Psa5g6242 373 MobiDBLite consensus disorder prediction 216 230 - -
Psa5g6242 373 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Psa5g6242 373 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Psa5g6242 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 78 - -
Psa5g6242 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 87 351 - -
Psa5g6242 373 CDD AP2 150 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6242 Psa-Chr5 531718542 531719882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6242 100 324 AP2-EREBP Transcription Factor Family AT2G20880 49.778 3.20e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g6242 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6242 - - lang:109337172 284.648