Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6238 ATGCCTAAGCTTAATCTCCTTATCACTCTTCTTCAATCTGTAACCATGATTCTATGTTGTGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCCACAAACATCGACTTATATGGAAAAGCCACTATTCAGTCCTCCATTCTCACTCTCACTAATGGAAGTTTCTTCTCAATAGGTCGAGCTTTTTACCCGAAAATATTACCTACCAAACTTCCCAACTCTTCCATTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCTGTTTCCCCCGTCAAAAACTTTATTGCAGGACATGCCCTTGCCTTCATATTCACACCCTCAAGAGGTCTAAATGGCACAACATCAGCCGAGTATAACGACCTTTTCAATCTCACCAATGAAGGTAATCCTAATAACCATGTTCTTGGAATTGAATTTGATATAGTTAGAAACGAAGAAGAATTCAACGATATAAATGATAATCATGTTGGTGTTGACATAAATTCGCTTACATCCTTAACTTTACATGAGGCTGGCTACTGGAGTGGAAAACATGACAATGAATTTAAGGTGTTGAAGATAAAAAGTGGAGAAAATTATCAAGTATGGATCGAATATATGCATTCTCGGATAAACGTTACTATGGCTCGTGCGGGACAAAAAAGGCCTCGTGTTCCTCTCATCAGTGTGAATCATCTAATATCAAATAAACTCAATTTAGCAACAGTTTCTCTTTTCATTCTCAGTCCTATCCCAATGTCTCAACTTCAGCTACTTCCTATTCTTCTTCACATTGTAACCATGATTCTATCTTGTGTTTCCACTACTGAATTTGTCTACAATACAAACTTCAACTCCACAAACATTGACTTATATGGAAAAGCCACTATGCAGTCCTCCATTCTCACTCTCACTAATGGAAGTTTCTTCTCAATAGGTCGAGCTTTTTACCCGAAAATATTACCTACCAAACTTCCCAACTCTTCCATTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCTGTTGCCCCCGTCAAAAACTTTATTGCAGGACATGCCCTTGCCTTCATATTCACACCCTCAAGAGGTCTAAATGGCACAACATCAGCCGAGTATAACGGTCTTTTCAATCTCACCAATGAAGGTAATCCTAATAACCATGTTCTTGGAATTGAATTTGATATAGTTAGAAACGAAGAAGAATTCAACGATATAAATGATAATCATGTTGGTGTTGACATAAATTCGCTTACATCCTTAACTTCACATGAGGCTGGCTACTGGAGTGGGAAACATGACAATGAATTTAAGGTGTTGAAGATAAAAAGTGGAGAAAATTATCAGGTATGGATTGAATTTATGCACTCTCGGATAAACGTTACTATGGCTCGTGCGGGACAAAAAAGGCCTCGGGTTCCTCTCATCAGTGTGAATGTTAACCTTGCTGGGGTTCTTATGGACGAAACCTATGTTGGATTCTGCGCTGCCACAGGGCGATTAATCGACAGTAGTAGGATTCTTGCTTGGAGCTTTAGTAATTCAAATTTTTCAATCGGTGATGCTTTAGTGACAGACAACTTGCCTTCGTTTGTCCCTTATAAGGGATGGTCTTCTCGAGCAAAAGTTATAGCTGTTGGAGTCACCAGTGTTGTCTGTTTGTTAATCGTTGGTTGCGGTTATGCACTGTTTTTCTTCATCCTATATAGAGGAGGGAAGGGAGACGAAGAAATTGAAGAGTGGGAACTAGAATATTGGCCACATAGAATTAGTTTCCAAGAGATTCATGAAGCAACAAGAGGGTTCTCTGAAGAGAATGTGGTTGCTGTAGGAGGGAATGGAAAGGTATATAAAGGGATTTTGCAAGGAGTTGAAGTTGCCGTCAAGAGAATCCCTCAAGAAAGAGAGGGTGGAATGAGAGAGTTTTTGGCAGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAGCATTGAGAGGTTGGTGCAAAGAAAAAAAAGGAAGCTTGATTCTAGTTTATGACTTCATGCACAACGGAAGTTTAGACAAATGGATCTTTGAGTGTGAAGAAGAAAAGATGCTAATATGGAAAGAAAGGATTCAAGTTTTGAAAAATGTAGCTGCAGGGATTCTATACCTACATGAAGGTTGGGAAGTTAAGGTCTTGCATAGAGATATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGAGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGACAAGTGGCCAGCACAACAAAAGTACTAGGGACATTAGGATACATTGCTCCGGAATTGATTCGAACGGGAAGAGCGTCGACTATGTCTGATGTGTTCGGCTTTGGTATATTTTTGTTAGAAGTAATTTGCGGGCGAAGACCTATTGAAGTGCATAAGCCAGGACTAATTGAATGGGTGAGGTCTCTAATGATGCTTAACCAATTGCACAATGCTGTTGATGAAAGGTTGAAGGCCAAAGGAGGATACCCTATCGAGGAAGCCGAAAGATTGCTTCATTTGGGTTTGATGTGTTCAAATTCAGACCCTAGTGTTAGACCAACAATGAGACAGGTTGTGAAAATTCTAGAGGGAGAAATGGACAACATTGATTGTGATGAGGAAAATATGGAGATGAGTTTGCATGGTAAACTAAAATCAATTGTAATGTGGTCTAAAACAATAAGTGCAGTTCCATATAGAAATCACCCTACTTTTGAAGAAGTAAAAAGTTATAATTCAAAGGCCTCTACAAGTGGCTCAAGTGTTATTCAAGCATCAGATTCAGATATCATTTGGGAAGGAAGATAA 2817 0.3901 MPKLNLLITLLQSVTMILCCVSTTEFVYNTNFNSTNIDLYGKATIQSSILTLTNGSFFSIGRAFYPKILPTKLPNSSILLPFATSFIFSVSPVKNFIAGHALAFIFTPSRGLNGTTSAEYNDLFNLTNEGNPNNHVLGIEFDIVRNEEEFNDINDNHVGVDINSLTSLTLHEAGYWSGKHDNEFKVLKIKSGENYQVWIEYMHSRINVTMARAGQKRPRVPLISVNHLISNKLNLATVSLFILSPIPMSQLQLLPILLHIVTMILSCVSTTEFVYNTNFNSTNIDLYGKATMQSSILTLTNGSFFSIGRAFYPKILPTKLPNSSILLPFATSFIFSVAPVKNFIAGHALAFIFTPSRGLNGTTSAEYNGLFNLTNEGNPNNHVLGIEFDIVRNEEEFNDINDNHVGVDINSLTSLTSHEAGYWSGKHDNEFKVLKIKSGENYQVWIEFMHSRINVTMARAGQKRPRVPLISVNVNLAGVLMDETYVGFCAATGRLIDSSRILAWSFSNSNFSIGDALVTDNLPSFVPYKGWSSRAKVIAVGVTSVVCLLIVGCGYALFFFILYRGGKGDEEIEEWELEYWPHRISFQEIHEATRGFSEENVVAVGGNGKVYKGILQGVEVAVKRIPQEREGGMREFLAEVSSIGRMKHRNLVALRGWCKEKKGSLILVYDFMHNGSLDKWIFECEEEKMLIWKERIQVLKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHGQVASTTKVLGTLGYIAPELIRTGRASTMSDVFGFGIFLLEVICGRRPIEVHKPGLIEWVRSLMMLNQLHNAVDERLKAKGGYPIEEAERLLHLGLMCSNSDPSVRPTMRQVVKILEGEMDNIDCDEENMEMSLHGKLKSIVMWSKTISAVPYRNHPTFEEVKSYNSKASTSGSSVIQASDSDIIWEGR* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6238 938 Pfam Protein kinase domain 600 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6238 938 SUPERFAMILY Concanavalin A-like lectins/glucanases 271 509 IPR013320 -
Psa5g6238 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Psa5g6238 938 Gene3D Transferase(Phosphotransferase) domain 1 672 887 - -
Psa5g6238 938 ProSiteProfiles Protein kinase domain profile. 596 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6238 938 Gene3D Phosphorylase Kinase; domain 1 567 671 - -
Psa5g6238 938 CDD lectin_legume_LecRK_Arcelin_ConA 24 234 IPR001220 GO:0030246
Psa5g6238 938 Gene3D - 269 514 - -
Psa5g6238 938 Gene3D - 22 240 - -
Psa5g6238 938 SMART serkin_6 596 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6238 938 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 233 IPR013320 -
Psa5g6238 938 PANTHER LECTIN RECEPTOR KINASE 248 926 - -
Psa5g6238 938 PANTHER LECTIN RECEPTOR KINASE 1 237 - -
Psa5g6238 938 SUPERFAMILY Protein kinase-like (PK-like) 574 866 IPR011009 -
Psa5g6238 938 Pfam Legume lectin domain 24 231 IPR001220 GO:0030246
Psa5g6238 938 Pfam Legume lectin domain 271 510 IPR001220 GO:0030246
Psa5g6238 938 PANTHER - 248 926 - -
Psa5g6238 938 PANTHER - 1 237 - -
Psa5g6238 938 CDD STKc_IRAK 605 867 - -
Psa5g6238 938 CDD lectin_legume_LecRK_Arcelin_ConA 271 509 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6238 Psa-Chr5 531632015 531636667 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6238 268 813 Receptor kinase-like Gene Family AT4G04960 56.239 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Psa5g6238 Pkinase 5.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6238 - - mtr:MTR_2g090410 1118.22