Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g6234 | ATGGCCTTAAATCAGTATTTTGCTGAGGGTGTGAACCAAATTGATTCCTTGGAAGGTAAATCATCTCAGGAAATGTGGAAATGTTCCGGTGCTGACGCAATTTCAGGTTCAAGTGGCTTTGACTGCAACATATGTCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGGCCAAGCTCAAGAGAACCAGAAGGAAAAGCCGCAATGTCCAGTATGCAAAACAGAAATTTCAAAATCATCACTTGTTCCGCTTTACGGCCGCGGCCAAACCCCATCGCCTTCCAAAGGCAATGCTCAGCAACTAAGGAGTGTCATACCACCGAGACCGCCCAGTCCTTCTTGGATGACTAACTTGCCAAGATCACTTGATGCTGGAACTGTTTCACAACACACTTCTCAAGTTTATCATCCTCATTATCATAATCATACTCATCGGAACACTTCACCAATGCTCAACACAGGTGGTTCACTGATCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAGATGATATACGCAAGGATCTTTGGAAACCAAGTGACAGACGTTTATACATATCCGAATTCATACAATCTTTCGGGGATCAGTAATCCTAGGATCAGAAGACATTTGAGGCGAGCTGATAAGTCACTTGGTTGTTAA | 696 | 0.4382 | MALNQYFAEGVNQIDSLEGKSSQEMWKCSGADAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHGQAQENQKEKPQCPVCKTEISKSSLVPLYGRGQTPSPSKGNAQQLRSVIPPRPPSPSWMTNLPRSLDAGTVSQHTSQVYHPHYHNHTHRNTSPMLNTGGSLINPLDTSYGVFGEMIYARIFGNQVTDVYTYPNSYNLSGISNPRIRRHLRRADKSLGC* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g6234 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 230 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa5g6234 | 231 | SMART | ring_2 | 42 | 89 | IPR001841 | - | |
Psa5g6234 | 231 | ProSitePatterns | Zinc finger RING-type signature. | 57 | 66 | IPR017907 | - | |
Psa5g6234 | 231 | Pfam | RING-type zinc-finger | 42 | 87 | IPR027370 | - | |
Psa5g6234 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 90 | IPR001841 | - | |
Psa5g6234 | 231 | CDD | RING-HC_AtRMA_like | 40 | 90 | - | - | |
Psa5g6234 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 109 | IPR013083 | - | |
Psa5g6234 | 231 | SUPERFAMILY | RING/U-box | 38 | 102 | - | - | |
Psa5g6234 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 3 | 230 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g6234 | Psa-Chr5 | 531264429 | 531266116 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g6234 | 40 | 229 | C3H Transcription Factor Family | AT4G27470 | 39.899 | 4.14e-38 | 131 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g6234 | K10666 | - | gmx:100785491 | 296.975 |