Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6234 ATGGCCTTAAATCAGTATTTTGCTGAGGGTGTGAACCAAATTGATTCCTTGGAAGGTAAATCATCTCAGGAAATGTGGAAATGTTCCGGTGCTGACGCAATTTCAGGTTCAAGTGGCTTTGACTGCAACATATGTCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGGCCAAGCTCAAGAGAACCAGAAGGAAAAGCCGCAATGTCCAGTATGCAAAACAGAAATTTCAAAATCATCACTTGTTCCGCTTTACGGCCGCGGCCAAACCCCATCGCCTTCCAAAGGCAATGCTCAGCAACTAAGGAGTGTCATACCACCGAGACCGCCCAGTCCTTCTTGGATGACTAACTTGCCAAGATCACTTGATGCTGGAACTGTTTCACAACACACTTCTCAAGTTTATCATCCTCATTATCATAATCATACTCATCGGAACACTTCACCAATGCTCAACACAGGTGGTTCACTGATCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAGATGATATACGCAAGGATCTTTGGAAACCAAGTGACAGACGTTTATACATATCCGAATTCATACAATCTTTCGGGGATCAGTAATCCTAGGATCAGAAGACATTTGAGGCGAGCTGATAAGTCACTTGGTTGTTAA 696 0.4382 MALNQYFAEGVNQIDSLEGKSSQEMWKCSGADAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHGQAQENQKEKPQCPVCKTEISKSSLVPLYGRGQTPSPSKGNAQQLRSVIPPRPPSPSWMTNLPRSLDAGTVSQHTSQVYHPHYHNHTHRNTSPMLNTGGSLINPLDTSYGVFGEMIYARIFGNQVTDVYTYPNSYNLSGISNPRIRRHLRRADKSLGC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6234 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa5g6234 231 SMART ring_2 42 89 IPR001841 -
Psa5g6234 231 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Psa5g6234 231 Pfam RING-type zinc-finger 42 87 IPR027370 -
Psa5g6234 231 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Psa5g6234 231 CDD RING-HC_AtRMA_like 40 90 - -
Psa5g6234 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 109 IPR013083 -
Psa5g6234 231 SUPERFAMILY RING/U-box 38 102 - -
Psa5g6234 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6234 Psa-Chr5 531264429 531266116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6234 40 229 C3H Transcription Factor Family AT4G27470 39.899 4.14e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6234 K10666 - gmx:100785491 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6234 5 531264429 531266116 Psa5g6234 5 531264429 531266116 ECH
Psa7g3896 7 324292007 324295796 Psa5g6234 5 531264429 531266116 PCT