Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6230 ATGAAGCACCACCGTGTCTCCGCCTTGGTTCTTTTAAGCCTATGCTTCATCCTCGCGCAAGGGCGGTCTAAGCAAAGCAGTGTCCACCTCGACACACATTGGCACCCGGGAACCGCCACCTGGTACGGCGAAGCAGAGGGAGACGGTAGCACAGGAGGGGCGTGTGGGTACGGTAATTTGGTGGACGTGAAGCCGTTCAGGGCAAGAGTAGGGGCAGTGGGGCCAGTGCTGTATAAGAAAGGAGAAGGGTGCGGAGAGTGTTATAAGGTGAAATGTTTGGACCATAGAATATGCTCCAAACGGGCAGTGACGGTTATAATAACAGATGAATGCCCCGGCTGCCCGTCTGACCGGACACACTTCGACCTCAGTGGTGCTGCTTTTGGTCACATGGCCGTTTCTGGTGAGAACGGTCAACTCAGAAATAGAGGTGAAATTCCAGTTGTTTACCGAAGAACAACATGCTTATACACTGGCAAAAATATTGCATTTCAAGTTAATGAAGGCTCCACACCATTTTGGTTGTCACTTCTAGTGGAGTTTGAGGATGGAGATGGGGACATAGGCTCCATGCTTATACAAGAAGCTGGGTCTAGTGAGTGGCTGCAAATGAAACATCTATGGGGTGCAAATTGGTGCATTACTGCTGGACCTTTGAGAGGACCTTTTTCGGTTAAACTAAGCACTTCCAGTGGGAGAAGCCTCACTGCTAAAGATGTTATTCCAACTAATTGGTCTCCGAAATCCACTTATACTTCTCGCTTAAATTTCTCTCCTTAA 780 0.4885 MKHHRVSALVLLSLCFILAQGRSKQSSVHLDTHWHPGTATWYGEAEGDGSTGGACGYGNLVDVKPFRARVGAVGPVLYKKGEGCGECYKVKCLDHRICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVSGENGQLRNRGEIPVVYRRTTCLYTGKNIAFQVNEGSTPFWLSLLVEFEDGDGDIGSMLIQEAGSSEWLQMKHLWGANWCITAGPLRGPFSVKLSTSSGRSLTAKDVIPTNWSPKSTYTSRLNFSP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6230 259 SUPERFAMILY Barwin-like endoglucanases 30 159 IPR036908 -
Psa5g6230 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Psa5g6230 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Psa5g6230 259 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Psa5g6230 259 PANTHER EXPANSIN-LIKE PROTEIN B1 17 259 - -
Psa5g6230 259 Pfam Lytic transglycolase 75 150 IPR009009 -
Psa5g6230 259 PANTHER EXPANSIN-B3 17 259 - -
Psa5g6230 259 Gene3D - 19 155 IPR036908 -
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 209 226 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Psa5g6230 259 SMART dpbb_1 70 150 IPR007112 -
Psa5g6230 259 Gene3D - 157 258 IPR036749 -
Psa5g6230 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 160 IPR007112 -
Psa5g6230 259 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6230 Psa-Chr5 531148998 531151154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6230 9 195 Expansin Gene Family AT4G28250 65.104 7.36e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6230 K20628 - gmx:100780112 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6230 5 531148998 531151154 Psa5g6230 5 531148998 531151154 ECH