Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6224 ATGGGTTGCGTGAATTCCAAGAGATCAGCTTTGGTTGACAGCAAGGAAGGTTTGGCATCATCTTGCAAAAGGAATGTTGATATGAATGTTTCAAGATTGGATAGAAAGAAAAAGGTTGATGGAGTTTTGAAGAAAGATGAGTTATCGGAGTGTGTTTGCGCGGGAGTTTCATTGAATGACAAGGAAGAAGATGGAGATAGGAATGAGAAGAAGAAGATGGAGAAAAGTGAATTGGATTTGGCCAATGTTGTTGATTATCCGAGTCTCGGAGGAAGGGTTCCAAAGGGTTTAGAAGGAGAGCAAGTTGCGGCAGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGGGAAGCTATCCATGGATGGATACCGCGGAGTGCAAGTACTTTCGAGAAGTATGATAAAATTGGACAAGGAACTTACAGCACTGTTTTTAAGGCACGCGATTTGACTAACCAAAAAATCGTCGCTTTGAAGCGGGTACGCTTTGATAATCTTGATCATGAGAGTGTCAATTTCATGGCAAGGGAAATCATTTTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAGGGCTTGATAACATCACCGACGTCTCGTAGCATGTATCTTGTTTTTGAGTACATGGAGCATGATCTTACAGGACTTGCAACAGCACCTGGCATTAAGTTTTCCGAACCACAGGTTAAATGCTACATGAAACAGCTTCTTAATGGATTGGATCATTGCCATAGTCGTGGTGTCCTCCACCGCGATATAAAGGGCTCAAATCTTCTCATTGACAATAAAGGCATTTTAAAGATTGCAGATTTTGGTTTGGCGAATTCGTTCGGCTCTGATCAAAGTGCCCCGTTGACCAGCCGCGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGATCATCAAATTATGGAGTTGCAGTGGATATGTGGAGCACTGGTTGCATACTCGGTGAACTATACTATGGAAGACCTATATTGCCTGGAAAAACCGAGGTTGAGCAATTGCATAGAATTTTTAAACTTTGTGGATCACCATCTGTGGACTACTGGCGTAAACTGCGGCTGCCACATTCTACAGGATTCAGGCCTCCACACCATTATAGGAATTGTGTTGCGGATACATTTAAAGATTTTCCATCTGCTGCTACGAAGCTTATAGAGACCCTACTCTCTTTAGATCCTATACTTCGAGGAACAGCAGCTACAGCTCTAAATAACGAGTTCTTTTCATTGGAACCTGTTGCTTGCGATCCATCAGCATTGCCAAAATATCCTCCCAGCAAAGAGATTCACACTAAAATGCGGGAAGAATCAACAAGAAGGCACAAAGCTCTTGGGGAAAAGGAGCAAAAAGTCGGGCCACGAGTTAGACATGAGAAAGAAACTCAGTCATTTGTCCTATCCAAAGCCAATGCTGATACTCGCATATCAATGAAGCATGAGCAGCGCTTTCCAAACATGGCAGGCTATGATGGGCTGTTCAGCCGTCATAGAGAGTCTGTATCTGGATTACTGGTTTCTCCTCAGAAACAGTCAGAAGATATTAAAGGAACAGTTAATTATTTCTCTGGGCCTCTTTATCCGAAGCCTTTGCACTCAGGTTTACTCGTTCCAGGTTTGGGCCGGCACAAAATTGGAATGGAAGCTGGTGAGCAACCACTTCCTTTCTCAAATAAAGTCAACCTATCAAAATATTCAAAACCATCTCCGACTTTGTTTTCTGGAACTCGAAAAGAAAAGCCAGTTCTGTTGAGACCAAGAGATACAATTCAAGAACCAAAATCTTTAGGGTTGAGTAATGGATCAGAGTCAAAAAGATGGCATGATAAAAATCGCCATTCTCAAAAAACCGATCTCAGCCAAACAAAAAATGGGAAGGACGGGCATGCATCCAGCAAAAACAATCTCTATATGATTGGTCCATTAAAGTTTCCATCAAACAATATGCATCATATGATCAAAGAGCGCAATCGGAAGACCCGAGAATATTCAAGATGA 2010 0.4219 MGCVNSKRSALVDSKEGLASSCKRNVDMNVSRLDRKKKVDGVLKKDELSECVCAGVSLNDKEEDGDRNEKKKMEKSELDLANVVDYPSLGGRVPKGLEGEQVAAGWPTWLSSVAGEAIHGWIPRSASTFEKYDKIGQGTYSTVFKARDLTNQKIVALKRVRFDNLDHESVNFMAREIIFLRRLDHPNIIKLEGLITSPTSRSMYLVFEYMEHDLTGLATAPGIKFSEPQVKCYMKQLLNGLDHCHSRGVLHRDIKGSNLLIDNKGILKIADFGLANSFGSDQSAPLTSRVVTLWYRPPELLLGSSNYGVAVDMWSTGCILGELYYGRPILPGKTEVEQLHRIFKLCGSPSVDYWRKLRLPHSTGFRPPHHYRNCVADTFKDFPSAATKLIETLLSLDPILRGTAATALNNEFFSLEPVACDPSALPKYPPSKEIHTKMREESTRRHKALGEKEQKVGPRVRHEKETQSFVLSKANADTRISMKHEQRFPNMAGYDGLFSRHRESVSGLLVSPQKQSEDIKGTVNYFSGPLYPKPLHSGLLVPGLGRHKIGMEAGEQPLPFSNKVNLSKYSKPSPTLFSGTRKEKPVLLRPRDTIQEPKSLGLSNGSESKRWHDKNRHSQKTDLSQTKNGKDGHASSKNNLYMIGPLKFPSNNMHHMIKERNRKTREYSR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6224 669 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6224 669 Gene3D Phosphorylase Kinase; domain 1 124 216 - -
Psa5g6224 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Psa5g6224 669 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Psa5g6224 669 SUPERFAMILY Protein kinase-like (PK-like) 122 414 IPR011009 -
Psa5g6224 669 SMART serkin_6 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6224 669 MobiDBLite consensus disorder prediction 607 627 - -
Psa5g6224 669 Gene3D Transferase(Phosphotransferase) domain 1 217 452 - -
Psa5g6224 669 MobiDBLite consensus disorder prediction 436 466 - -
Psa5g6224 669 Pfam Protein kinase domain 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6224 669 MobiDBLite consensus disorder prediction 653 669 - -
Psa5g6224 669 MobiDBLite consensus disorder prediction 571 669 - -
Psa5g6224 669 PANTHER CELL DIVISION PROTEIN KINASE 59 668 - -
Psa5g6224 669 PANTHER CYCLIN-DEPENDENT KINASE 59 668 - -
Psa5g6224 669 CDD STKc_CDK9_like 129 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6224 Psa-Chr5 530951382 530955670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6224 121 464 Core Cell Cycle Gene Families AT5G10270 47.222 1.34e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa5g6224 Pkinase 5.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6224 - K08819 gmx:100781209 877.47