Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6213 ATGGTAGTTGTCGAGCATCAGGAGACTGAGGATCGAAACCCCAAACCCTCCAACGCCGGTACAAGTAACGATGCTTCCGAAGGTTTTGAAACCGCCAGTGACACCGATCTCGGCAGCGACGTCGACGCCAATGACGGCGGTGCAATCAAACACAAAGAACGGGAACATCTTCAGCAACAGAATCAACATACTGAGCAAGAGCAGGAGCAGGAGCAGGGTGATCCTCAGAGAATGATTTCCTCTGACGATGCTTCAATCAACGAGGAGGAACTGAAACAGAAAGCATTGATTCAAGCAAATGAAGCAAAGGTAGAGGGGAACAAACTTTTTTTAGATGCTAAGTATGAGGAGGCATTAACACAATATGAACTAGCTTTACAAGTTGCGCCAGATATGCCTTCATCTGTAGAAATACGATCAATATGCCATGCTAATCGTGGTGTGTGCTTTCTGAAAATGGGGAAATATGACAACACTGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCTACCTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAACTTGAGCATTTTGAAGAGGCCATCGCAGATATGAAAAAGATTTTAGAAATTGATCCCTCAAATGATCTAGCTGGGAAAGCCATTCGCCGGCTAGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAAGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCAACCAGTAA 816 0.4412 MVVVEHQETEDRNPKPSNAGTSNDASEGFETASDTDLGSDVDANDGGAIKHKEREHLQQQNQHTEQEQEQEQGDPQRMISSDDASINEEELKQKALIQANEAKVEGNKLFLDAKYEEALTQYELALQVAPDMPSSVEIRSICHANRGVCFLKMGKYDNTVKECTKALELNPTYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDLAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFNQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6213 271 Coils Coil 49 74 - -
Psa5g6213 271 SMART tpr_5 140 173 IPR019734 GO:0005515
Psa5g6213 271 SMART tpr_5 174 207 IPR019734 GO:0005515
Psa5g6213 271 SMART tpr_5 99 132 IPR019734 GO:0005515
Psa5g6213 271 SUPERFAMILY TPR-like 99 211 IPR011990 GO:0005515
Psa5g6213 271 ProSiteProfiles TPR repeat profile. 174 207 IPR019734 GO:0005515
Psa5g6213 271 Gene3D Tetratricopeptide repeat domain 52 238 IPR011990 GO:0005515
Psa5g6213 271 MobiDBLite consensus disorder prediction 45 72 - -
Psa5g6213 271 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 22 271 - -
Psa5g6213 271 MobiDBLite consensus disorder prediction 1 78 - -
Psa5g6213 271 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 22 271 - -
Psa5g6213 271 Pfam Tetratricopeptide repeat 175 207 IPR013105 -
Psa5g6213 271 MobiDBLite consensus disorder prediction 14 33 - -
Psa5g6213 271 Pfam Tetratricopeptide repeat 142 173 IPR001440 GO:0005515
Psa5g6213 271 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6213 Psa-Chr5 530533930 530539846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6213 99 241 Calmodulin-binding Proteins AT3G25230 37.748 1.31e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6213 K24926 - gmx:100808386 378.252