Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6179 ATGATGAAGGTGATACAACAGTGTCAAGTTTCACCACCACCCAATTCACTTCCATCGCCAACCATTCTCCCTCTCACTTTCTTCGACATTCCATGGTTTTATTGTCACCCTGTTAAACGCATCTTCTTCTACCACTTTCCTCATCCAACACACCACTTCCTTCAAACAACCCTTCCCATTCTCAAACACTCTCTTTCTCTCACCCTCCAACACTTCTTCCCCTTTTCCTCCAATCTCATCATCCCTCCAGATTCCCGTGACGCCCCTTACATACGCTACCTTGACGGCGACTCACTCTCCTTCACCGTCTCTGAATCCTCCGCAAACTTCAACATCCTCGTATCTGATTCACAAGACGCTCAAAACTGGCACCCTCTTGTTCCTAACTTGCCTTCACCTCGTACCGAACCTAACGGTACACGTGTTGTTCCTTTAATGGCCATTCAACTCACCGTTCTACCAAACTCTGGATTCTCTATCTCTCTCACGTTCCAACACGTCGCCGGAGATGGAACATCACTTCATCATTTCATTAAATATTGGGCCTCTCTTTCAAAAGCCAGTGCAAACAACAACAGTAATAGTTTATTATCTCTTGATCTTCCTTCCCATGAAAGAGATAGAGTCAAAGACACAAAAGGTCTTAAATCTATCTACTTACAAGAACTACAAGATTCTGATTCGAAAAACATGGAATTTGCGGGTATCGTTCAAGATTCTTATGTTAACAAGGTGCGAACAACTTTAGTTTTGAGCTATGAACAAGTTCAGAATTTGAAGAAATGGGTGACTAATAAATGTAAAGACAGTCATAGAACGCAACATCTGTCAACTTTTGTTGTGACAAGTTCCTTGATTTGGTTTTGTATGGTTAAATCGGAGCATAGCGAAAGCAAAAGGGATCAAGATGATTGTGCTGTTGTTGATGATGATCTCTGCTACTTTGTGATTCTTGCAGACTGTCGTGGTAGCAGTGAACTTTTATTACCAAAAGCTTACTTTGGAAATTGTGTTACTTCTTATACTGTGGCTATAAAGAGGAATGAGTTAGTTGGAGAAAATGGGATTGTTGTGGCTGCAAATGGTATTGAAAACAAGATAAGAGATTTTAAGAGTAATGCTTTATTAGGAGCTGAAATGGTGATGTCCAATTACAGGGAATTATCGAAACCTGGTAAGTCTGTTATAGTGGTTGCAGGATCACCTAAACATGCTGTTTATGAGACTGATTTTGGTTGGGGGAAGCCTTTGAAATCTGATGCAGTACATCTTGATTCAACTGGTTCGATCTCTCTTTCTGATGGTAGAGATGGTGAAGGTGGAATTGAGGTTGGTTTGGCTCTTGAGAGGTCTCAAATGGCTAATTTCATCAGCATCTTTCAACAACAACTTGATTATATTTGTAGCATCTGA 1413 0.4076 MMKVIQQCQVSPPPNSLPSPTILPLTFFDIPWFYCHPVKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPPDSRDAPYIRYLDGDSLSFTVSESSANFNILVSDSQDAQNWHPLVPNLPSPRTEPNGTRVVPLMAIQLTVLPNSGFSISLTFQHVAGDGTSLHHFIKYWASLSKASANNNSNSLLSLDLPSHERDRVKDTKGLKSIYLQELQDSDSKNMEFAGIVQDSYVNKVRTTLVLSYEQVQNLKKWVTNKCKDSHRTQHLSTFVVTSSLIWFCMVKSEHSESKRDQDDCAVVDDDLCYFVILADCRGSSELLLPKAYFGNCVTSYTVAIKRNELVGENGIVVAANGIENKIRDFKSNALLGAEMVMSNYRELSKPGKSVIVVAGSPKHAVYETDFGWGKPLKSDAVHLDSTGSISLSDGRDGEGGIEVGLALERSQMANFISIFQQQLDYICSI* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6179 470 Gene3D - 1 235 IPR023213 -
Psa5g6179 470 PANTHER - 1 469 - -
Psa5g6179 470 Pfam Transferase family 22 458 - -
Psa5g6179 470 Gene3D - 242 467 IPR023213 -
Psa5g6179 470 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6179 Psa-Chr5 528598921 528601289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6179 30 456 Monolignol Biosynthesis Gene Families AT5G48930 20.460 1.70e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6179 - - mtr:MTR_2g089670 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6179 5 528598921 528601289 Psa5g6179 5 528598921 528601289 ECH