Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6169 ATGGTGAGAAGCCCTTGTTGTGACAAAAATGGAATGAGAAAAGGGGCATGGACTCCTGAAGAAGACAACAAGTTAATTGCATATGTAACTAGATATGGCTGTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGATGTGGGAAGAGTTGTAGACTTAGGTGGTTGAACTATCTAAGACCAAATATCAAAAGAGGAAACTTTACTCAACAAGAGGAAGATACTATCATAACACTTCATCAAAAACTTGGTAATAGATGGATTATGATAGCTGCAAATTTACCAGGAAGAACAGATAACGAGATAAAGAATCATTGGAACACAAACTTGAAAAAACGTTTTCTAAAGAATAATAAATCAGACAAAGACACTAATAATGGAATAGGAAACTCCAAAGAAATAAATTCAGATAACCCTACCATGGGAGAAGAAAACAAACATGAAGGACTGTTAGAGAGCAATAGTGGTCCCAATATTTCAAGTCGATTTTCTTCAACTCCATCTTCAAGTGGAACAATGGATACTCCTCCAACAACTACGGAAATATCATATGAAAAATATCTTCTTGATGAGCTTCGTTTAATGGATCCATACATGGATGTTTTGAATGATAATTTCTGGACAGAACCATATATCATAGACAATTCATACGTCCCTCCAAGTCAAGAAGCTACGTTACTAGCTGTGGGATATGAACATGGAAACTTGAGTGGGATGTACTATGAACAACTTTGGAACATGGAAAATAAATTGTTGCACTGA 768 0.3581 MVRSPCCDKNGMRKGAWTPEEDNKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYLRPNIKRGNFTQQEEDTIITLHQKLGNRWIMIAANLPGRTDNEIKNHWNTNLKKRFLKNNKSDKDTNNGIGNSKEINSDNPTMGEENKHEGLLESNSGPNISSRFSSTPSSSGTMDTPPTTTEISYEKYLLDELRLMDPYMDVLNDNFWTEPYIIDNSYVPPSQEATLLAVGYEHGNLSGMYYEQLWNMENKLLH* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6169 255 CDD SANT 69 112 IPR001005 -
Psa5g6169 255 SMART sant 66 114 IPR001005 -
Psa5g6169 255 SMART sant 13 63 IPR001005 -
Psa5g6169 255 CDD SANT 16 61 IPR001005 -
Psa5g6169 255 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g6169 255 Gene3D - 68 139 - -
Psa5g6169 255 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 218 - -
Psa5g6169 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g6169 255 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa5g6169 255 Gene3D - 14 66 - -
Psa5g6169 255 MobiDBLite consensus disorder prediction 115 181 - -
Psa5g6169 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g6169 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g6169 255 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g6169 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Psa5g6169 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g6169 255 MobiDBLite consensus disorder prediction 153 181 - -
Psa5g6169 255 MobiDBLite consensus disorder prediction 123 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6169 Psa-Chr5 528045926 528047920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6169 1 218 MYB Transcription Factor Family AT2G31180 49.083 3.18e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6169 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6169 K09422 - mtr:MTR_2g089420 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6169 5 528045926 528047920 Psa5g6169 5 528045926 528047920 ECH