Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6161 ATGGTGAGAAGCCCTTGTTGTGACAAAACTGGATTGAGAAAAGGGACCTGGACTCCTGAAGAAGACAAGAAGTTAATTGCTTATGTAACTAGATATGGCTGTTGGAATTGGCGACAACTACCTAGATTTGCAGGTCTTGAAAGGTGTGGGAAAAGTTGTAGACTAAGATGGTTGAACTATCTAAGACCAAATATCAAAAGAGGAAACTTTACTCAACAAGAGGAAGATACTATCATAACACTTCATCAACAACTTGGTAATAGATGGATTGTGATTGCTGCAAATTTACCTGGAAGAACAGACAACGAGATAAAGAATCATTGGCACACAAACTTGAAAAAGCGTTTTATGAAAATTAATAAACCAGACACCGACAATAATAATGGAACAGGAAACTCCAAAGACATAAATTCAGATAACCCTACAATGGAAGAACAAAACAAACATGAAGGAGTGTTAGAGAGCAATAATGGCCCCAATGTTACAACTCCATTGTCTTCAACCCCATCTTCAAGTGAAACAATGGATACTCCAACAAGTACGGAAATATCATATGAAAAATATCTTCTTGATGAGCTTCCTTTAATGGATTCATACATGGATGTTTTGAATGATAATTTTTGGACAGAACCATATATCATAGACAATTCATATGTCCCTCCAAGTGAAGAAGCTACATTATTACCTGTCTGGTTTGAACATGAATACTTCAGTCCTGTGTATGATGAACAGTTTTGGAGCCATGGAGAATAA 753 0.3639 MVRSPCCDKTGLRKGTWTPEEDKKLIAYVTRYGCWNWRQLPRFAGLERCGKSCRLRWLNYLRPNIKRGNFTQQEEDTIITLHQQLGNRWIVIAANLPGRTDNEIKNHWHTNLKKRFMKINKPDTDNNNGTGNSKDINSDNPTMEEQNKHEGVLESNNGPNVTTPLSSTPSSSETMDTPTSTEISYEKYLLDELPLMDSYMDVLNDNFWTEPYIIDNSYVPPSEEATLLPVWFEHEYFSPVYDEQFWSHGE* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6161 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Psa5g6161 250 MobiDBLite consensus disorder prediction 152 180 - -
Psa5g6161 250 Gene3D - 69 150 - -
Psa5g6161 250 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 217 - -
Psa5g6161 250 CDD SANT 69 112 IPR001005 -
Psa5g6161 250 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa5g6161 250 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g6161 250 SMART sant 66 114 IPR001005 -
Psa5g6161 250 SMART sant 13 63 IPR001005 -
Psa5g6161 250 CDD SANT 16 61 IPR001005 -
Psa5g6161 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g6161 250 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g6161 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g6161 250 MobiDBLite consensus disorder prediction 122 140 - -
Psa5g6161 250 Gene3D - 14 66 - -
Psa5g6161 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g6161 250 MobiDBLite consensus disorder prediction 117 180 - -
Psa5g6161 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6161 Psa-Chr5 527465282 527466528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6161 1 217 MYB Transcription Factor Family AT2G31180 48.387 1.04e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6161 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6161 K09422 - mtr:MTR_2g089420 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6161 5 527465282 527466528 Psa5g6161 5 527465282 527466528 ECH
Psa5g6161 5 527465282 527466528 Psa7g3662 7 309469158 309472462 PCT