Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6139 ATGAAGAAAAACTGCGAACTCTGCAAACTTCCGGCTAGAACTTTCTGTGAGTCCGACCAGGCTAGCTTATGCTGGGACTGCGATTCTAAGATCCACAGTGCAAATTTCCTTGTTGCCAGACACGTGAGGACTCTCCTCTGTCACCGGTGCCAGTCTCCGACGCCGTGGAAAGCCTCCGGTGCTAGGCTTAGTAACGCGCTTTCTCTGTGCGAAACGTGCGGCCGCGGTGGTGGTGGAAGGAAATTGGAAGGTGAGCAGGAGGAAGAGAGTGAAGGTGACAATGAGGAGGACGATGAGGTTGATACTGATTTTGATGAGGAAGAGGAAGAGGAAGAGGAGGTTGACGGTGATGAGGATGGTGATAATCAGGTGGTTCCTTGGTCTTCTACGGCGGAGCCGCCGGCGGCTTCGAGTTCTTCCGGTAGCGAAGAGTCGGTTAGTAAGTGCAACGATAACGATGAGGAGGTTGTTTCGAAGTTAGTTACAACAAACTTAGTTTCTCTGAAACGACGTCGTGAGGAGGATCGTGATTTTCAGGCTTCAGATTCGAAAATTTGTGTAAATCAACGTAGGTACGGTGCTGAGAGGAGGAGATGCGACGGAGAACCGCCGTGGAAGGCGTCGATCCGGCAAGTAAGTGACGGAAAAGCCCCGGAGAATTCTCAGCCGCACGATTGA 678 0.5177 MKKNCELCKLPARTFCESDQASLCWDCDSKIHSANFLVARHVRTLLCHRCQSPTPWKASGARLSNALSLCETCGRGGGGRKLEGEQEEESEGDNEEDDEVDTDFDEEEEEEEEVDGDEDGDNQVVPWSSTAEPPAASSSSGSEESVSKCNDNDEEVVSKLVTTNLVSLKRRREEDRDFQASDSKICVNQRRYGAERRRCDGEPPWKASIRQVSDGKAPENSQPHD* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6139 225 MobiDBLite consensus disorder prediction 88 120 - -
Psa5g6139 225 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Psa5g6139 225 SMART bboxneu5 1 46 IPR000315 GO:0008270
Psa5g6139 225 MobiDBLite consensus disorder prediction 123 146 - -
Psa5g6139 225 PANTHER - 3 192 - -
Psa5g6139 225 MobiDBLite consensus disorder prediction 80 155 - -
Psa5g6139 225 MobiDBLite consensus disorder prediction 192 225 - -
Psa5g6139 225 CDD Bbox1_BBX-like 5 46 - -
Psa5g6139 225 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6139 Psa-Chr5 526039434 526041217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6139 1 134 C2C2-CO-like Transcription Factor Family AT4G27310 44.785 7.87e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g6139 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6139 - - mtr:MTR_2g089310 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6139 5 526039434 526041217 Psa5g6139 5 526039434 526041217 ECH