Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6135 ATGTTGGCGAAAGCTTGTGAGAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAAATGGAAAGAGTATAATGCTCAACTTGATGCCAGCAATGACGCGGATAAGCCTGTTCGAAAAGTTGCGGCGAAGGGATCGAAGAAAGGGTGTATGAAAGGCAAAGGAGGGCCTGAAAACTCGCGGTGTAATTATAGAGGTGTTAGACAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGCGAGCCGAATCGGGGGAGTAGGTTATGGTTAGGTACTTTTTCTACTGCCATTGGTGCTGCTCTTGCTTATGATGAAGCGGCCCGGGCAATGTATGGTTCTTGTGCCCGTTTGAACTTTCCTAATGTTTCAGTTCCGAGATTCCCTGAGGAATCTTCAAGTGATTCTCCAGTTGAAAACCAGTCGGGTTCCTCGATGGTAGTGTCTGAAAACACCGAGTCCATGATAATACCGAATAACTCAGGGATAGGAATAGACGTTGTCAGTAATGATATGGAACCGATTTCCTTACCTGTAAGTGTAAAACAGGAGATCTAG 558 0.4588 MLAKACEKGDGSKSLGKILAKWKEYNAQLDASNDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFPEESSSDSPVENQSGSSMVVSENTESMIIPNNSGIGIDVVSNDMEPISLPVSVKQEI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6135 185 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Psa5g6135 185 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 151 - -
Psa5g6135 185 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Psa5g6135 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 151 - -
Psa5g6135 185 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6135 Psa-Chr5 524797527 524798940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6135 8 121 AP2-EREBP Transcription Factor Family AT2G40350 62.712 6.66e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g6135 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6135 - - cam:101488673 297.36