Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6127 ATGGGAAGATCACCTTGTTGTGATAAAACTGGACTCAAAAAAGGTCCATGGACACATGAAGAAGATCTTATGCTTGTCAACTATATTAACACTCATGGAGCTGGAAATTGGCGCAATCTCCCCAAAAATGCTGGTCTTCAAAGATGTGGCAAGAGTTGTCGGCTTCGTTGGACAAATTACTTGAGACCTGATATCAAGAGAGGAAGATTCTCGTTCGAGGAAGAAGAAGCCATCATTCAACTTCATAGTGTCTTGGGAAACAAATGGTCTGCTATAGCGGCTAGATTACCCGGGAGAACGGATAATGAAATAAAGAATTACTGGAACACGCACATTAGGAAAAGACTACTTCGAAGTGGAATCGACCCGGTCACTCATACACCGCGTCTTGATCATCTCTTCGACATGTCCTCCATTAATATTCTGAGATCAGCTTTATTAGGATCCAACCCATCATTTCTGAATCTCTTAGGTGGTGCTCAAGCTTTGATGAATCCAGAGTTGTTAAAACTAGCTGCAACTGCCACACTATTAAACAACAACAACAATAACAACATGAATTTGGTTTCACAGAATCAACAACAGTTCAATAATGTTGCTAATTATTCTTCTCAACAACAAGTACAAAATCAAGTTTCTTTACAAGATCAGTTACAAATACCAACTCAAACTCACAACAATATAATGAGTAGTTCGAATTCCGCTGAAAATCCAAATCCTTGTTATTTTGAGGAGGATTTGATTTCCAAACAATATTCAGAACTGTTTCATTGTCTTAACGATGGAAACAATAACAATACGGGATATGAATCGGTTATATCGTCTACACCGTTATCGACGACTCCAACACCAACGCCGTTGAATTCATCATCAACTTATGTGAATAGCTGCACAGAGGAGGAAAGGGATACATATTGCAGTGACATATTCAAGTTTGAAATTCCAGAGAGTAGTTTGGATATTAATGATTTCTTGTAA 978 0.3824 MGRSPCCDKTGLKKGPWTHEEDLMLVNYINTHGAGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRSGIDPVTHTPRLDHLFDMSSINILRSALLGSNPSFLNLLGGAQALMNPELLKLAATATLLNNNNNNNMNLVSQNQQQFNNVANYSSQQQVQNQVSLQDQLQIPTQTHNNIMSSSNSAENPNPCYFEEDLISKQYSELFHCLNDGNNNNTGYESVISSTPLSTTPTPTPLNSSSTYVNSCTEEERDTYCSDIFKFEIPESSLDINDFL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6127 325 CDD SANT 69 112 IPR001005 -
Psa5g6127 325 Gene3D - 13 66 - -
Psa5g6127 325 CDD SANT 16 61 IPR001005 -
Psa5g6127 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g6127 325 PANTHER TRANSCRIPTION FACTOR MYB41 1 319 - -
Psa5g6127 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa5g6127 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g6127 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g6127 325 SMART sant 13 63 IPR001005 -
Psa5g6127 325 SMART sant 66 114 IPR001005 -
Psa5g6127 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g6127 325 Gene3D - 69 116 - -
Psa5g6127 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g6127 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 319 - -
Psa5g6127 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6127 Psa-Chr5 524225986 524227669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6127 1 325 MYB Transcription Factor Family AT4G21440 46.703 1.49e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6127 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6127 K09422 - gmx:102668351 389.808