Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6121 ATGGACATGGATTCCACTGGTGATGGTTCCTCTTGTTGGCTCTATGATTATGGCTATGATATCTCTCTTGCTGCTGCTGATTTTATGACTTCTTCTAATTATCACTCTTCCGCTGCTGCTGATTTCATGGCTTCTTCGAATCATCACTCTTCTGCTGCTGCTGCTTTCAACTGGATGCCCCAGTCTCAGTCTCAGACTCACATCATCAACCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTAGATTCTACTGTTTTCGAAAATGGCCCTTGGAAGCCTTCAAAGCGATTGGAAATGGAATACTCGTTAGATTCAACTTTACTCGAAAATGGCCGTTCAAAGCGGTTAAGGACAGAATCATATGCTTCTGGTTCCAAAGCAGGTCGTGAGAAAGTGAGAAGGGATAAACTCAACGATAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATACACTCCCCAAAACAGACAAGGTCACTTTATTAAACGATGCGGTTCGAATGGTGACTCAATTAAGAAACGAAACACAGAGGCTCAAGGGAAGGAACGATGAATTACGCGAAAAAGTTAAAGAGCTTAAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGCTGGAGCAACAAGTGAAATTAACAGGTGTGCAGTCAAGCTTCCTCTCTAATGCCATGGCTGCTAAAGCGCAAACTGTTGGCCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAATTGATACATCACAGGATCATCTCCTTCGACCACCCGTTGCTTAA 840 0.4333 MDMDSTGDGSSCWLYDYGYDISLAAADFMTSSNYHSSAAADFMASSNHHSSAAAAFNWMPQSQSQTHIINPPSSNISLEMEYSLDSTVFENGPWKPSKRLEMEYSLDSTLLENGRSKRLRTESYASGSKAGREKVRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRMVTQLRNETQRLKGRNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTGVQSSFLSNAMAAKAQTVGHKLMPFIGYPGISMWQFMSPATIDTSQDHLLRPPVA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6121 279 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Psa5g6121 279 Gene3D - 128 206 IPR036638 GO:0046983
Psa5g6121 279 PANTHER BHLH TRANSCRIPTION FACTOR 8 279 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Psa5g6121 279 Coils Coil 165 220 - -
Psa5g6121 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Psa5g6121 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 191 IPR036638 GO:0046983
Psa5g6121 279 SMART finulus 130 181 IPR011598 GO:0046983
Psa5g6121 279 CDD bHLH_AtILR3_like 129 204 - -
Psa5g6121 279 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 8 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6121 Psa-Chr5 523936712 523938017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6121 112 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.887 3.61e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6121 HLH 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6121 - - mtr:MTR_2g089000 392.119