Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6104 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCAACATCCATTTCGTTTCAAAACCCTTCACTTTTCAACACAATCACTTCCACTCCACCACTTCCTCAACCAGAAGCACTTAAAGGCTGTCTTGGAAGCCTAGATGGAGCATGTATCGAAAAGCTCTTACTCCATTGTGCAAGTGCTTTGGAAAGCAACGACATAACCCTAGCTCAACAAGTTATGTGGGTCCTAAACAACGTTGCTTCACCTTTAGGTGACACTAACCAAAGACTAACCTCATGGTTTCTAAGAGCATTGATCTCTAGAGCTTCAAGAATTTGTCCTACTTCAATGAATTTCAAAGGAAGTAACATTATTCAAAGAAGGTTGATGTCGGTCACCGAACTCGCCGGGTATGTTGATCTTATTCCTTGGCATAGGTTTGGATTTTGTGCTTCCAACAATGAAATTTTCAAAGCAATTAAGGGATTCAAAAGGGTACATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACCAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCAATGGTTCCACCTTTGGTTAACATATCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCGAAATTTAAGGATGTCTCTTTTGAGTTTAATGTTATTGGAGATAATGTTTCGAATTCGTTGACATCGGAAGAATCGACTAGCTTTGATTTTGAATCAATGTTGAGTCTCTTGAATCCTAGTATGTTGAATCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAACTGGCTACGTTATTTGTCGGACGAGAGAAAGGGTCAAAACATTTCGATTCGAGATGTTTTTATGAATTTAGTTAAAGGACTTAACCCTCAAATAGTGCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACTGCTTCTTTTAACCATTTATGGATACCCTTTGATGCATTGGACACTTTTTTGCCTAAAGATAGTTGTCAAAGGACTGAGTTTGAATCTGACATAGGACAGAAAATTGAGAACATTATAAGCTTTGAAGGGCATCAAAGAGTTGAGAGATTGGAGTCAGGGATGCAAATGTCACAAAGAATGAAAAATGTTGGTTACTTTAGTGTTCCATTTTGTGACGAAACTGTTGTTGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGATGGGGAATGAAAAGAGAAGAAAACATGTTGGTTCTTACATGGAAAGGAAATAGTTGTGTGTTTGCGACCGCTTGGATCCCTAATGAAATTAGGGATCATATCAGTATAGATGCACGCATATCTTAA 1365 0.3736 MHVHMKAELKATSISFQNPSLFNTITSTPPLPQPEALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPTSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDSLAKLPEGPPSLRITVPSFRPMVPPLVNISIHEVGQRLGNFAKFKDVSFEFNVIGDNVSNSLTSEESTSFDFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDERKGQNISIRDVFMNLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRVERLESGMQMSQRMKNVGYFSVPFCDETVVEVKGLLDEHASGWGMKREENMLVLTWKGNSCVFATAWIPNEIRDHISIDARIS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6104 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 440 IPR005202 -
Psa5g6104 454 Pfam GRAS domain family 50 438 IPR005202 -
Psa5g6104 454 PANTHER OS05G0500600 PROTEIN 6 440 - -
Psa5g6104 454 ProSiteProfiles GRAS family profile. 40 439 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6104 Psa-Chr5 522688654 522690816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6104 31 440 GRAS Transcription Factor Family AT3G49950 45.238 5.14e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g6104 GRAS 3.2e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6104 - - gmx:100805056 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6104 5 522688654 522690816 Psa5g6104 5 522688654 522690816 ECH