Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6098 ATGGTAATATCAGTGATATTTATCAGAATAAGGTTGTTTATGGAAGCGCTATGTGAGTTTTGTGAGATTGTTAGAGCTGTGGTTTACTGCAAGCCAGATTCTGCTCGATTATGTATGCGTTGCGATGCGATTGTACACTCCGCGAATGCGCTTGCTCGCAGACATCCGAGATCGTTATTGTGTGATAGGTGTAATTTCGATTCAGCGATTGTTCGCTGTGTTGATTATAAAATGTCTCTGTGTCAACTTTGTGATTGGAATTCTACAGATGAGTGTTTTGCGTTGGGGCATAACCATGTGCTACTTACTTTCTACACTGGTTGTCCCTCTTTGGCAGAGTTGTCAAAGATTTGGCCGCATTTTGTCTATGGAAATTCATCGGCTGAGAGCAATGTTGCTAGCTCTAAGCCTTTGGATTGGCCGCCTGAAAAGAACCACGGTTGCTTTCATTTGGAGAAAGCGAAAAACAAGATGGACGGAGAAGAGCCGTCTGTCAAAGATGAACAACCTTGGATTGAGACACCACCTATAGTGTCGTCAAATTCGAACGGCACAAAATACTGCAGAGATCAAGCGTTTTTGTTTGATCTAGACTCAAATCAACAGAAGCTTCAAGGATGCCCTGATGTCAAGGAACTAGTTTTTCATGAGGGGACTAGTCTCTGTGAAGGTTTCAATGTGGATGATGTTCAATTAGATTTTGAAAGCGCTGATGAAATATTTGGCCGCTCTCAAAGTGCCGCAAAATACAACCATGAAGATGGAGGAATGAAGTGTCTATTAATGGATAAAAACATTCAAGTCACAAAATGTACCAGTCTTACCGAGATTGCAGCAGAGGCTTTATCACCACTGCAACAAGATTGTGTGGCTGGCGGATCAACAAGTGTGATGCAGGGCATCAACAATAATGCAAACTCTGCACTTATGACTCCTAGCAGCAACAGTAGCATTACTATGGGATTTCCTCAGAGTCAAATTCATTCAGGAACTTCAATTGAATTACCTAATCTTAATGGTGAAAACAATGTTACTGAACTTCTAAATTGTGAGTTACCTCCGGTGTTTCATCCCGGCGAATCCCCTTGGGAACCAAATTTGGAGGGTACGTGTGCAGAAGCAAGGGAACAAGCAAAAATGAGATACCAAGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCCTCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTCGATTCGTTAAAGCAGAAGAGACAGGAGTCAACGGCGAACCATCCTGA 1284 0.4221 MVISVIFIRIRLFMEALCEFCEIVRAVVYCKPDSARLCMRCDAIVHSANALARRHPRSLLCDRCNFDSAIVRCVDYKMSLCQLCDWNSTDECFALGHNHVLLTFYTGCPSLAELSKIWPHFVYGNSSAESNVASSKPLDWPPEKNHGCFHLEKAKNKMDGEEPSVKDEQPWIETPPIVSSNSNGTKYCRDQAFLFDLDSNQQKLQGCPDVKELVFHEGTSLCEGFNVDDVQLDFESADEIFGRSQSAAKYNHEDGGMKCLLMDKNIQVTKCTSLTEIAAEALSPLQQDCVAGGSTSVMQGINNNANSALMTPSSNSSITMGFPQSQIHSGTSIELPNLNGENNVTELLNCELPPVFHPGESPWEPNLEGTCAEAREQAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAEETGVNGEPS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6098 427 SMART bboxneu5 13 60 IPR000315 GO:0008270
Psa5g6098 427 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 16 420 - -
Psa5g6098 427 Pfam CCT motif 375 417 IPR010402 GO:0005515
Psa5g6098 427 CDD Bbox1_BBX-like 17 60 - -
Psa5g6098 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 420 - -
Psa5g6098 427 ProSiteProfiles CCT domain profile. 375 417 IPR010402 GO:0005515
Psa5g6098 427 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6098 Psa-Chr5 522397014 522401790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6098 14 420 C2C2-CO-like Transcription Factor Family AT3G21880 37.317 1.79e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g6098 CCT 3.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6098 - - mtr:MTR_2g088900 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6098 5 522397014 522401790 Psa5g6098 5 522397014 522401790 ECH