Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6094 ATGGAACCCGTTTGCCCTATCACCTCCTCTCGCGCCACTGAAATTTCCGCTCTTCTATCTCCTCCTTCACCTCGCCAACTTCAGGAATATTATCACAACATTTTCTCTGCAACACACTGCAATGGTATCACCGTCAAACACGATCAAAAATTTGGAAAAGGTGTGTATGCTGCAATGGATTTCAAAGAGGATGAACTTGTTCTCAAGGACCAAATGCTTGTAGGGACTCAACACTCCTTCAACAAGATTGATTGTTTTGTGTGTAGCTTCTGCTTTCGTTTTATTGGTTCTATAGAAACTCAAATTGGGAGGAGGCTTTACTTGAGAGAATTAAGGGCCAATGAGAGTCATGCTTGTGATGTAGGAACCTCTTCACAGTCTATTGAAAACTCTCATGAAATGGATTCATCTGATGAAGAAGACAGCACTTTGCAAGGTTGTTCGGGTGGTTTAAAGAATATAGTTCCTCTCCCTGAAGGAGTTGTGGAATCATTGATGAATGGTGAATTGAGATTGCCTTGCTCTGAGAAGTTCTCATTGCCTCCATCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTTGTGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATCCAAGGCGTAGAGAGGCACTCCTTAAATTCATGAAACATGCTAATGAAACAAATGACATATTCCTCCTTGCTGCAAAGGCCATTTCTTCTACCATATTAAGGTACCACAAGTTAAAAGCAAATTGTCCCGAAGAGAAACTGAAATATGATGCATCCTGTGTTTCAGACAACTATAATTTCTATCTTCTTTTGGAAGCTTGGAGACCTATATCAATGGGATACAAAAAGAGGTGGTGGGACTGCATTGCATTACCAGATGATATCGATTCTTCCGATGAAGTGTCATTCAGGATGCAAATAAAAGAGTTGGCATATGAGTCTCTCCAACTTCTTGAAACAGCAATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAACTGAATAATCTTGATTTGGTTGTTGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGAAATGACAAACCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTTTAGGTGAAGACTATTCTACTTGTTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGTATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCACTGAGGTCCATCTATAAAGGAGAAGAGATAACCATTTCATATGTTGATGAAGACCTTCCATTTGAAGAGAGACAAGCATCTCTTGCAGATTACGGTTTTAGATGTAAATGTCCAAAGTGCATTGAAGAAGAGCCATAG 1464 0.4023 MEPVCPITSSRATEISALLSPPSPRQLQEYYHNIFSATHCNGITVKHDQKFGKGVYAAMDFKEDELVLKDQMLVGTQHSFNKIDCFVCSFCFRFIGSIETQIGRRLYLRELRANESHACDVGTSSQSIENSHEMDSSDEEDSTLQGCSGGLKNIVPLPEGVVESLMNGELRLPCSEKFSLPPSVPCPGGCGEAYYCSMLCAEADWESSHSLLCTGESSDPRRREALLKFMKHANETNDIFLLAAKAISSTILRYHKLKANCPEEKLKYDASCVSDNYNFYLLLEAWRPISMGYKKRWWDCIALPDDIDSSDEVSFRMQIKELAYESLQLLETAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDEMTNPDKEEAEKITQPILDALGEDYSTCCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSIYKGEEITISYVDEDLPFEERQASLADYGFRCKCPKCIEEEP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6094 487 CDD SET_SMYD 396 482 - -
Psa5g6094 487 Gene3D SET domain 375 486 IPR046341 -
Psa5g6094 487 SUPERFAMILY HIT/MYND zinc finger-like 181 214 - -
Psa5g6094 487 SMART set_7 41 463 IPR001214 GO:0005515
Psa5g6094 487 SUPERFAMILY SET domain 39 480 IPR046341 -
Psa5g6094 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Psa5g6094 487 ProSiteProfiles SET domain profile. 325 457 IPR001214 GO:0005515
Psa5g6094 487 MobiDBLite consensus disorder prediction 122 142 - -
Psa5g6094 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6094 Psa-Chr5 522141106 522146495 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g6094 SET 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6094 - - aip:107613919 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6094 5 522141106 522146495 Psa5g6094 5 522141106 522146495 ECH