Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6087 ATGAATACCAACAACAACAGCAACAACTATAACATGTCTCCACTCTCTGATCATCAAAACAAACCCATCATTCATGAATTCGATTTTTTCTCTCTAAATAATACCAACCATGCCTCTACTTCTGCACCCCCCCTTCATCATTGCACCCCTTCTTCTCTTACTGAATCCAAAGTAAACACTAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATCAATCCATGGTGGAACCTGACATATCAAATAAGTCAGAAGACAAAAGAGATAAGCTTGAGCTTGATGTTCTTCAAGCTGAGCTTGAGAGAAAGAAGGCGGAGAATCACAGGCTGAGGAACATGTTTGACGAAGCCAAGATGAATTACGAGGCGCTGCAAATGCATATGTTGAGTTTGATGCAGGAGAGAAGCGTAGAGGATTGTAAAGAAGAGGAACAAGAAGAAGAGAAGCCAAATGGGAATGGTGGAGTTTTGATTCCAAGACAAATTGTAGATCTTGCGAAAGACAACGAGGAAGGTTCTAAGGATGAAGAACTTGTGTTTGATCCTGACAAAGAGGAATCTGACCACGAAAATGAAAGAAATGATAGTCAAGTTTTAGCAGCTAATAATAATACTAATAATGTTTCAAATTTCAGTGCTCAAACTAATGTTGAAGAAGCTGAGGCAACGATGAAGAAAGCTAAAGTTTCGGTTCGAGCTCGGTCGGAGGCTAATATGATCAATGATGCGTGTCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAATCCGTTTCCTCGAGCTTATTATCGATGCACCATGGCTTTAAATTGTCCGGTGAAAAAACAGGTACAAAGGTGTGCTGAGGACAAATCAATATTAGTAACAACATATGAAGGAAATCACAACCATGCTTTGCCACCAGCAGCTATGGAAATGGTAAAACAAACATCAGCAGCAGCAAGAATGCTACTATCAGGGCCAATGACAAGTCCTGATGGACTAATGAATTCAAATTTTCTCACAAGAACAGTGTTTCCTTCTTCTTCAAGCATTGCAACTATTTCGGCATCAGCTCCATTTCCAACCATTACATTGGACTTAACTCAATCACCAAATAATCCATTACAGTTTCCTACTCAGACATTGTTTAATCAGTCAGGATTTTCAGGACTTCAAATGTCTCAAGATGCAGAAACTTCGCAATCTCAACAGATATCACAGAACCTTACAGCTGATCCTGACTTGACTGCAGTTTTGGTAGCTGCTATTACTTACATGATTGGGGTGGCACAACCAAACGATAATGACACAAAAACCAATAATAATAATGGCAATGTTATATAA 1329 0.3935 MNTNNNSNNYNMSPLSDHQNKPIIHEFDFFSLNNTNHASTSAPPLHHCTPSSLTESKVNTSLNLLTTNTSSDQSMVEPDISNKSEDKRDKLELDVLQAELERKKAENHRLRNMFDEAKMNYEALQMHMLSLMQERSVEDCKEEEQEEEKPNGNGGVLIPRQIVDLAKDNEEGSKDEELVFDPDKEESDHENERNDSQVLAANNNTNNVSNFSAQTNVEEAEATMKKAKVSVRARSEANMINDACQWRKYGQKMAKGNPFPRAYYRCTMALNCPVKKQVQRCAEDKSILVTTYEGNHNHALPPAAMEMVKQTSAAARMLLSGPMTSPDGLMNSNFLTRTVFPSSSSIATISASAPFPTITLDLTQSPNNPLQFPTQTLFNQSGFSGLQMSQDAETSQSQQISQNLTADPDLTAVLVAAITYMIGVAQPNDNDTKTNNNNGNVI* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6087 442 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 434 IPR044810 GO:0003700
Psa5g6087 442 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6087 442 PANTHER WRKY TRANSCRIPTION FACTOR 6 13 434 - -
Psa5g6087 442 MobiDBLite consensus disorder prediction 66 88 - -
Psa5g6087 442 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6087 442 Coils Coil 81 120 - -
Psa5g6087 442 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g6087 442 Pfam WRKY DNA -binding domain 241 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6087 442 MobiDBLite consensus disorder prediction 164 194 - -
Psa5g6087 442 MobiDBLite consensus disorder prediction 135 194 - -
Psa5g6087 442 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6087 Psa-Chr5 521666050 521667811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6087 58 438 WRKY Transcription Factor Family AT1G62300 47.045 4.23e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g6087 WRKY 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6087 - - cam:101511587 419.853