Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6085 ATGGCCAACGTGGAACACACACTTCAGGAAGTTTCTGCAGATTCTTCCATAGATCAATCCAAATCCAGTAGTATTACTCAAGTAAATTCCAAGGTTGAATTTTCTAAAGATGAGGAAGCTCTTATTATCAGGATGTATAAACTACTAGGGGATAGGTGGCCATTAATTGCTGGAAGAATTCCTGGACGAACAGCTGAAGATATAAAGAATTACTGGACTTCAAGAGACTCTTCCACTAGCCAATCAAATGTCAAATAA 258 0.3798 MANVEHTLQEVSADSSIDQSKSSSITQVNSKVEFSKDEEALIIRMYKLLGDRWPLIAGRIPGRTAEDIKNYWTSRDSSTSQSNVK* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6085 85 SUPERFAMILY Homeodomain-like 33 74 IPR009057 -
Psa5g6085 85 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 80 IPR017930 -
Psa5g6085 85 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 79 - -
Psa5g6085 85 SMART sant 30 78 IPR001005 -
Psa5g6085 85 Gene3D - 33 75 - -
Psa5g6085 85 CDD SANT 33 72 IPR001005 -
Psa5g6085 85 Pfam Myb-like DNA-binding domain 31 73 IPR001005 -
Psa5g6085 85 ProSiteProfiles Myb-like domain profile. 26 76 IPR001005 -
Psa5g6085 85 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 79 - -
Psa5g6085 85 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6085 Psa-Chr5 521347885 521348833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6085 34 83 MYB Transcription Factor Family AT5G14750 51.724 5.54e-16 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g6085 Myb_DNA-binding 3.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6085 - - mtr:MTR_2g088730 115.546