Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6084 ATGAACGACCTTCTTACTGATTCATTTGTTAGTGAGGCTACTAATGGGCAGCCTTCTAGACAAGGTGATATTGAAATGGGAATGCAGGTTCCAGGAAGCAATTCTGATATGGGAATGGAAGCTTTTAATAAACAGATCCAAGACGCCGATAAACAAATTGAGAAGCTATCTGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAGGCATCTTCCATGAAGGCTATCAAGAAGAGGATGGAAAAAGATATCGATGAAGTTGGAAAGATTGCATATGGTGTCAAAGCGAAAATTGAAGCTATCAACCGAGAAAATCTGAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACCGGTATTGATAGAGCAAGGATGAATATGACAAATTCCTTGACTAAAAAATTCAGGGATCTTATGACAGAGTTTCAGACTCTGAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACGATTGACCACCTGATAGAAACTGGAAACAGCGAGCAAATCTTCCAACAAGCAATTCTTGAAGCTGGCCGAGGACAGGTAGTGAACACGGTAGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATCGAGAAAAAACTTCTTGATTTACATCAGATTTACCTCGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATTGAAAGCCAGGTGGTAAATACAACTGATCATGTGAAATCGGGTAACGACTCTCTTCACATTGCAAAGAGTCTGCAAAAGAAGTCAAGAAAATGCATGATGATTGCCATAATATTGATCCTGCTCATTGCCATCTTTATAGTACTCGCTGTTTTGAAACCATGGAAGAAGTAA 921 0.3974 MNDLLTDSFVSEATNGQPSRQGDIEMGMQVPGSNSDMGMEAFNKQIQDADKQIEKLSVLLQKLKEANEESKAVTKASSMKAIKKRMEKDIDEVGKIAYGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNSLTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVVNTTDHVKSGNDSLHIAKSLQKKSRKCMMIAIILILLIAIFIVLAVLKPWKK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6084 306 MobiDBLite consensus disorder prediction 1 25 - -
Psa5g6084 306 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Psa5g6084 306 CDD SNARE_syntaxin1-like 208 268 - -
Psa5g6084 306 Coils Coil 39 76 - -
Psa5g6084 306 Gene3D - 202 302 - -
Psa5g6084 306 SMART SynN_4 34 160 IPR006011 GO:0016020
Psa5g6084 306 PANTHER SYNTAXIN 10 300 IPR045242 -
Psa5g6084 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 300 - -
Psa5g6084 306 SMART tSNARE_6 204 271 IPR000727 -
Psa5g6084 306 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g6084 306 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Psa5g6084 306 CDD SynN 39 196 IPR006011 GO:0016020
Psa5g6084 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Psa5g6084 306 Pfam SNARE domain 245 297 IPR000727 -
Psa5g6084 306 Gene3D - 34 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6084 Psa-Chr5 521329940 521335624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6084 1 304 SNARE and Associated Proteins AT3G03800 59.804 2.66e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6084 K08486 - gmx:100807404 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6084 5 521329940 521335624 Psa5g6084 5 521329940 521335624 ECH