Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6072 ATGTTCCAGTCAAACCTAATGGAAGCTGGACAACTTCATCATCATCAGCTTCTACCACTGGACATGACGCAGAACAACAACACTTCTGAAAGCGACGTTCCGAGAATCCGTGAAGATGAATTCTTCGACAGTGCTACAAAATCCGGTAACAGTGAGAATCAAGAAGCTGCTAATTCAGGTGGTGAAGATCAAGAACCTCGTGCTAAGAAAAAACGTTATCATCGTCATACACAGCATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACATCCTGATGACAAGCAAAGGAAGGAACTGAGTCGAGAGTTAGGGCTAGAGCCATTACAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCATGAGAATACCGCGCTTCGAACTGAGAATGACAAGCTTCGTGCTGATAACATGAGGTTTAGAGAAGCTCTTAGTAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCGATTGGAGAGATGTCGTTTGATGAACATCATCTGAGACTCGAAAATGCTCGACTCAGAGAAGAGATTGATAGGATATCTGCCATTGCCGCAAAGTACGTAGGCAAGCCGGTGGTGAGTTATCCGTTACTCTCTCCTTCATCCGGTACTCCTCGTCCTCTAGAACTCGGCATTGGTGGTTTCGGAGGACAACCAGGATTGAGTGGAGGAGACATGTACGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCGACAGAAGCTGATAAACCGATGATAATTGAGCTCGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCTCTTTGGTTAACTACAATTGAAGGTGCTTCCATACTCAACGAGGAGGAGTATGTTCGGACTTTTCCTCGAGGAATTGGTCCAAAACCGGCTGGTTTTAAATGTGAAGCTTCGAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTCGTGGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGTATTGTTTCAAGAGCAATGACATTGGAAGTGCTCTCAACTGGAGTAGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGTTGAACTACAAGTACCTTCACCACTTGTGCCAACAAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGCTGATGGAACTTGGGCCGTTGTCGACGTTTCGTTGGACAATTTGCGCCCTAGTCCTTCTTCAAGATCTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCTAATGGCTATTCGAAGGTTATATGGGTTGAACATGTAGAAGTGGATGAAAGAGGTGTTCATAATCTATACAAGCAACTCGTTAGCTCCGGGCACGCTTTCGGCGCGAAGCGTTGGATCGCGACGTTAGATCGACAATGTGAAAGACTTGCTAGCGCGATGGCGACAAACATTCCCACAGTTGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACATGGACAACGCTTTCCGGTACCGGAGCCGACGATGTCCGCGTCATGACCCGTAAGAGCGTGGACGATCCCGGAAGACCAGCCGGCATTGTTCTTAGTGCCGCAACTTCTTTTTGGCTCCCAGTTTCACCAAAGAGAGTTTTTGAATTTCTGAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCTAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAACTGTGTTTCGCTACTTCGAGTGAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGATCATTTGTTATATATGCACCTGTGGACATAGTTGCGATGAATGTGGTTCTAAATGGAGGTGATCCTGATTATGTTGCACTTCTTCCATCCGGATTTGCTATATTACCGGACGGAACAACAAATGGAGGAGGAAACGGTGGTGGTGAAAGTGGTGGTCATGGTGGTGGTGGTGGTGGTTCTCTATTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACAGCAAAACTTTCTCTTGGATCTGTTGCTACCGTTAATAATCTCATTGCGTGTACCGTTGAGAGGATCAAAGCTTCTTTGTCTGGTGAAGTTGCTTGA 2238 0.4455 MFQSNLMEAGQLHHHQLLPLDMTQNNNTSESDVPRIREDEFFDSATKSGNSENQEAANSGGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTALRTENDKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSGTPRPLELGIGGFGGQPGLSGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTIEGASILNEEEYVRTFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTVELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRSRRRPSGCLIQEMPNGYSKVIWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTNGGGNGGGESGGHGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6072 745 ProSiteProfiles START domain profile. 252 483 IPR002913 GO:0008289
Psa5g6072 745 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Psa5g6072 745 SUPERFAMILY Bet v1-like 252 482 - -
Psa5g6072 745 CDD homeodomain 70 128 IPR001356 GO:0003677
Psa5g6072 745 SMART HOX_1 68 131 IPR001356 GO:0003677
Psa5g6072 745 SUPERFAMILY Bet v1-like 500 737 - -
Psa5g6072 745 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Psa5g6072 745 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Psa5g6072 745 Pfam START domain 262 480 IPR002913 GO:0008289
Psa5g6072 745 SUPERFAMILY Homeodomain-like 57 128 IPR009057 -
Psa5g6072 745 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 22 742 - -
Psa5g6072 745 MobiDBLite consensus disorder prediction 17 79 - -
Psa5g6072 745 Gene3D - 305 477 IPR023393 -
Psa5g6072 745 Gene3D - 55 143 - -
Psa5g6072 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 742 IPR042160 -
Psa5g6072 745 CDD START_ArGLABRA2_like 256 479 - -
Psa5g6072 745 MobiDBLite consensus disorder prediction 46 60 - -
Psa5g6072 745 SMART START_1 261 480 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6072 Psa-Chr5 520434252 520440512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6072 36 745 Homeobox Transcription Factor Family AT1G05230 78.852 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa5g6072 START 2.9e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6072 K09338 - gmx:100809556 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6072 5 520434252 520440512 Psa5g6072 5 520434252 520440512 ECH
Psa5g6072 5 520434252 520440512 Psa7g3637 7 303978546 303983925 PCT