Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6070 ATGGAGGTGTTAGGAGTAAAGGGTTTTTTCCTCTTGATTTTGTATTTGTGGTTTTCAAAGAAAGTTGTGGGAAGTACAAACTCTAGTGTTTCTTCTAGACCTAAAGTAGTGAAAATTGGAGCATTGTTTACTGTTGATTCTGTGATTGGAAAATCAGCTAAACCAGGAATCATGGCTGCAGTTGAAGATGTTAATGCTAATAACACCATTCTTTCTGGTATTAATCTTGAAGTTATTTACAAGGATACAAATTGCAGTGGATTTGTTGGAACTGTGGAAGCTTTGCAGTTGATGGAGAATGAAGTGTTTGCTGCAATTGGTCCACAATCCTCAGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTTCATGTACCGCTTCTTTCGTTTGGAGCAACGGACCCGACTTTGTCGTCTCTGCAGTATCCGTATTTCGTCCGGACGACGCACAGCGACTATTTTCAGATGTATGCAGTTGCGGACCTTGTTGATTTTTATAGATGGAGGCAAGTGATTGCGATTTTTGTAGATGATGATAATGGAAGAAACGGCGTTTCGGTGCTCGGAGACGCGCTGGCGAAGAAACGCGGGAAGATATCTTATAAAGCCGCGTTATCTCCTGGAGCGACCGAGAGTAATATCAGTGACTTGTTGAATGGTGTGAATTTGATGGAATCAAGAGTGTTTGTTCTTCATGTTAATCCTGATACTGGTTTGGATATTTTTAATGTCGCCAAGAATCTTGGAATGATGAAAAGTGGTTATGTTTGGATTGCGACCGATTGGCTTCCTTCGAAGCTCGATTCGATGGAAACGGTTGATACCGATACGTTGAAACTCCTTCAAGGTGTTGTAGCTTTGAGGCATCACACTCCTGATACTAATCTCAGAAAGAGTTTTTTCTCGAGGTTGAAGAACACGAAAGGCGTGGAAACTTCAAGATTCAACTCTTATTCTTTATACGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATACATTTCTCAAAGAAGGTGGAAATGTATCTTTCTCATCTGATCCTAAGTTGGTTAACACCAATGGAAGCATGTTGCATTTGTCTTCGCTTCGTGTTTTCGACGGCGGTCCTTCGTTTCTCCCTACACTTTTGAGAATGAACTTCTCCGGTTTAAGTGGTCGGATTCAGTTTGATCCAGATAATAATCTAATTCAACCGTCATATGATATCCTTAACATCGGAGAATCAGGTTCCCGAAGAGTCGGTTATTGGTCTAACTACTCCGGTCTATCGGTTTTAGCTCCGGAAATTTTGTACACGAGACCGCCTAACACTTCATCAAGCAATCAAAAACTGTTCAATGTTTTGTGGCCTGGAGAAACTATAAACACCCCGAAAGGATGGGTTTTCCCTAACAACGGAGAGCCGCTGAAAATAGTCGTGCCTCGTAGAGTAAGCTACTTGGGTTTTGTTTCTAAAGATAAGAATCCACCTGGAGTTAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATTCCGTTCCGCGAAAATATATATTATACGGAGATGGTAATCGAAATCCCGACTATAGCCAGCTTGTCAATGAGGTTGCACTAAATACCTATGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTCACTCAACCATTCATGGAATCAGGTCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGGCTTTCCTCAAGCCATTCACCGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTCCTTTTTGTCGGAGCCGTTGTGTGGATTCTCGAACACAGGCACAATCCAGAGTTCCGAGGTCCGCCCAAGAAACAAATCATGACAATATTTTGGTTTACTTTCTCGACAATGTTTTTCTCACACAGAGAGAACACCGTTAGTGGTCTTGGGAGATTCGTGCTAATCATATGGCTTTTCGTGGTTCTAATTATCAACTCAAGCTACACAGCAAGCTTAACGTCGATCCTCACAGTGCAGCAACTTTCGTCGCAAATTGAAGGAGTTGAAAGCTTGATATCAAGTACTCAACTGATTGGAATTCAAGACGGATCGTTCGCAAAGAGGTATCTGATAGACGAACTCAATATACAACCGTCTAGGATAATTTCGTTGAAAGATCCAAAAGCGTACGTGGACGCCCTTACGCGTGGACCAAAAGCAGGAGGGGTTATGGCTATTGTCGACGAGCTTCCATATATTGAACTCTTTATGTCTAGTACCGACTGCAAATTCAGAACTGTTGGACAGGAGTTTACTAAAAGTGGTTGGGGATTCGGATTCCAAAGGGACTCTCCCCTTGCGGTTGACATGTCAACGGCCATTCTCCAACTCTCGGAGAACGGTGACTTGCAAAAGATCCACGACAAATGGATATCAAGACATGACTGTGCTGCAAAAGTCAACGACGACGTTGATTCAAACGAACTATCTCTCAGTAGCTTCTGGGGCCTCTTCCTTATATGCGGCATTGCATGTTTCCTTTCTTTGATCGCGTTCTTTGTCCGCGTGTTCTGTCAGTACATGAAATTCATCCCAGAGAGCGACGGAGAAGTTGACCAGGAAAATCCATCCGACAGGCCTAGAAGAACTTTTCGATCCTCGAGAAGCTTCAAAGACTTGATTGGATTCGTGGATAAGAGAGAAAAAGAAATCAAGGAGATACTTCGACAAAAGAGTAAGAAAAGGCGACGCGCCGAGAGTTTAGATGATCAATTAAGTTCACCTATTTAA 2796 0.4235 MEVLGVKGFFLLILYLWFSKKVVGSTNSSVSSRPKVVKIGALFTVDSVIGKSAKPGIMAAVEDVNANNTILSGINLEVIYKDTNCSGFVGTVEALQLMENEVFAAIGPQSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTHSDYFQMYAVADLVDFYRWRQVIAIFVDDDNGRNGVSVLGDALAKKRGKISYKAALSPGATESNISDLLNGVNLMESRVFVLHVNPDTGLDIFNVAKNLGMMKSGYVWIATDWLPSKLDSMETVDTDTLKLLQGVVALRHHTPDTNLRKSFFSRLKNTKGVETSRFNSYSLYAYDSVWLAAYALDTFLKEGGNVSFSSDPKLVNTNGSMLHLSSLRVFDGGPSFLPTLLRMNFSGLSGRIQFDPDNNLIQPSYDILNIGESGSRRVGYWSNYSGLSVLAPEILYTRPPNTSSSNQKLFNVLWPGETINTPKGWVFPNNGEPLKIVVPRRVSYLGFVSKDKNPPGVKGYCIDVFEAAINLLPYSVPRKYILYGDGNRNPDYSQLVNEVALNTYDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGVESLISSTQLIGIQDGSFAKRYLIDELNIQPSRIISLKDPKAYVDALTRGPKAGGVMAIVDELPYIELFMSSTDCKFRTVGQEFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWISRHDCAAKVNDDVDSNELSLSSFWGLFLICGIACFLSLIAFFVRVFCQYMKFIPESDGEVDQENPSDRPRRTFRSSRSFKDLIGFVDKREKEIKEILRQKSKKRRRAESLDDQLSSPI* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6070 931 CDD PBP1_GABAb_receptor_plant 38 427 IPR044440 -
Psa5g6070 931 Gene3D - 584 707 - -
Psa5g6070 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 913 - -
Psa5g6070 931 Gene3D - 759 820 - -
Psa5g6070 931 CDD GluR_Plant 471 813 - -
Psa5g6070 931 MobiDBLite consensus disorder prediction 912 931 - -
Psa5g6070 931 Gene3D - 467 583 - -
Psa5g6070 931 SUPERFAMILY Periplasmic binding protein-like II 448 813 - -
Psa5g6070 931 Coils Coil 899 926 - -
Psa5g6070 931 PIRSF IGluLR_plant 6 929 IPR017103 -
Psa5g6070 931 Gene3D - 58 400 - -
Psa5g6070 931 Pfam Ligand-gated ion channel 814 847 IPR001320 GO:0015276|GO:0016020
Psa5g6070 931 Pfam Receptor family ligand binding region 57 408 IPR001828 -
Psa5g6070 931 PANTHER GLUTAMATE RECEPTOR 3.4 22 913 - -
Psa5g6070 931 Pfam Bacterial extracellular solute-binding proteins, family 3 527 813 IPR001638 -
Psa5g6070 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 50 66 - -
Psa5g6070 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 110 138 - -
Psa5g6070 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Psa5g6070 931 SUPERFAMILY Periplasmic binding protein-like I 32 463 IPR028082 -
Psa5g6070 931 Gene3D - 152 425 - -
Psa5g6070 931 SMART GluR_14 473 815 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6070 Psa-Chr5 520323126 520327347 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6070 33 784 Ion Channels AT1G05200 67.725 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6070 K05387 - gmx:100783715 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6070 5 520323126 520327347 Psa5g6070 5 520323126 520327347 ECH