Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6068 ATGAAGCAGTTTATGGTTTCGCGCCTTGTGATTTGGATTCAGGTAATCCTCTTTTTTGGTTTTGCTGATAGTGAAAGGCCTGAAAGTGTGAAAATTGGAGCAGTTTTCACCTTCGATTCTGTCATAGGTAGAGTTGCAAAGGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAACAGTTCTTAATGGTACGAAGCTTAACTTGATAATGAAGGATGGTATGTGTAATCCTTTTCTGGGATCAACTGGAGCTTTTCAGGTACTTGAGCAAGGGGTCATAGCCATAATTGGTCCACAATCATCCGCTATGGCTCATTCAATTTCTCAAATAGCGGATGCTGTCCATGTTCCCCTTATTTCGTATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTCCGTACCGTACAAAGTGACTCAGAACAAATGTCTGCAATGGCGGATCTGATCGACTTTAACGGATGGAAAGAGGTCATTGTTGTATACTTGGACGATGATTACGGAAGAAATGGAATATCTTCTTTGAGCGATGAACTTGAAAACAGGAGATTGAAAATAGCTCACAAACTAGCTTTGAGTATTCAGTTCGATCTGAACGAAATCACTAAATTGCTCAATCAATCCAAAGCATTTAGCCCTCGTGTTTTTGTTGTTCATGTCAACCCTGATCCGAGATTGAGAATCTTTTCCATCGCTCGCAAACTTCAAATGATGACTAGTGACTATGTATGGCTTGTCACAGATTGGCTCGCTGCTACCCTACATTCGTTTCTGCCAGCGAATCAGAAAGCTCTTAGCATCGTCGAAGGAGTTGTCGGTCTTCGTCAACATATTCCAGATTCTAATAAAAGAAGAGATTATATTTCTCGATGGAAAAAGATGCAAAAGGAAGGTATAGCAAATACTAGCTTGAACTCTTACGGATTCTTCGCTTACGATACAATTTGGACAGTTGCACATTCGATTGATAAATTTTTGAAAGTATATAAAAATATTACATTCTCGCTTCATGACAACAATATGGTAGCTCATACAGAAGGAATCGGTATTCAGCTTGAGAAGCTCAAAGTTTTTGCTGCCGGATCTGATTTTGTTGACATATTATTAAAGTCAAATTTTAGCGGCGTGAGTGGTCAAATTCGTTTTAGTTCAGACAGAAATATCATAAGTAGTGGTTATGATGTTATCAATATCAATCGGATGAAAATTAATAAGGTTGGTTATTGGTCCAATCATTCAGGATTTTCAGTTGTTCCTCCCGAAATTCTTGCGAAAAAGGAACATCGCCGGGTTTCTGTAGATCAGAAGCTTGCCAATATAACTTGGCCAGGTGGGAAAACAGAACGACCGCGCGGCTGGGTGATTGCTGATAATGCTAAGCCATTGAGAATTGGAGTGCCAAAGAGAGCGAGTTTTGTTGAATTTGTAACTGAACTGCAAGATAGTCATCAGATTCAAGGGTATTGTATCGATATCTTCGTGAAGGCCTTGGAGTTTATTCCTTATGAAATTCCTTTTGTTTTCAAGCCGGTTGGGAATGGTAAATCAAATCCAAATTACGACGGACTTGTGAAAAAGATTGATGAAAATGTATATGATGCAGTTGTTGGAGACATCGCGATTGTGACGAACCGAACGAAGATTGTGGACTTTTCTCAGCCTTTTGCATCATCTAGTCTTGTTGTAGTGGCTCCTATCAACCGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCATTCTCACCAGATATGTGGTGTATCATTATTGCATCATTTTTCATGATTGGAGTGGTTATATGGATTCTTGAACACCGAGTCAACGACGAGTTCCGTGGTCCTCCTAAGAGACAAATTGTAACAATGTTTATGTTCAGCCTCTCAACATTGTTTAAGACAAATAATAATACCGTAAGCTCGCTTTCGAAAATGGTGTTGATAGTCTGGCTTTTCCTACTAATGGTGATCACAGCAAGCTATACAGCAAGTTTGACTTCAATTCTCACAGTGGAACAGCTTTCGTCACCGATCACAGGAATCGATAGTTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTATAGCTATCTGACAGATAATCTTTATGTATCAAGTTCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATACGCCGTAGCACTTCGGAACGGACCGTCCGGTGGTGGCGTAGCAGCTATCGTCGACGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACAGATTTCGGTATCATCGGTCAGCCATTTGCCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCTCCTCTTGCACTTGACATGTCAACCGCAATTCTAAAACTCGCCGAAAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAAATGGGCTGTCCCGGTGAACGGAAAAGCGACCCTAAACCCGACCAACTTCACTTGATCAGCTTCTGGGGTCTATATCTCTCATGCAGTGTCATCTCTGTCATCGCGCTTGTTCTGTTTATGCTGCGAATGATCAGCCAATATGTTGGATTCAAACAAAGACAGAAGGACAGCGCTGCCTCGTCGTCGGAACCGTCGGACAGTCATTGTTCCCGGGTCGTAGTGAACTTCTTTAACTTCATTGATAAAAAAGAAGATGCAATCAAGAAAATGTTCACTCAATGTGACAATAATCCTCATAACCCCAACTCAGAATTATGA 2748 0.4098 MKQFMVSRLVIWIQVILFFGFADSERPESVKIGAVFTFDSVIGRVAKAAMEMAVSDVNSDPTVLNGTKLNLIMKDGMCNPFLGSTGAFQVLEQGVIAIIGPQSSAMAHSISQIADAVHVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMSAMADLIDFNGWKEVIVVYLDDDYGRNGISSLSDELENRRLKIAHKLALSIQFDLNEITKLLNQSKAFSPRVFVVHVNPDPRLRIFSIARKLQMMTSDYVWLVTDWLAATLHSFLPANQKALSIVEGVVGLRQHIPDSNKRRDYISRWKKMQKEGIANTSLNSYGFFAYDTIWTVAHSIDKFLKVYKNITFSLHDNNMVAHTEGIGIQLEKLKVFAAGSDFVDILLKSNFSGVSGQIRFSSDRNIISSGYDVININRMKINKVGYWSNHSGFSVVPPEILAKKEHRRVSVDQKLANITWPGGKTERPRGWVIADNAKPLRIGVPKRASFVEFVTELQDSHQIQGYCIDIFVKALEFIPYEIPFVFKPVGNGKSNPNYDGLVKKIDENVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVVVAPINRSKSNAWVFLKPFSPDMWCIIIASFFMIGVVIWILEHRVNDEFRGPPKRQIVTMFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSSSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETDFGIIGQPFARSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSDPKPDQLHLISFWGLYLSCSVISVIALVLFMLRMISQYVGFKQRQKDSAASSSEPSDSHCSRVVVNFFNFIDKKEDAIKKMFTQCDNNPHNPNSEL* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6068 915 Gene3D - 48 397 - -
Psa5g6068 915 Pfam Receptor family ligand binding region 47 407 IPR001828 -
Psa5g6068 915 Gene3D - 580 708 - -
Psa5g6068 915 SUPERFAMILY Periplasmic binding protein-like I 26 451 IPR028082 -
Psa5g6068 915 CDD PBP1_GABAb_receptor_plant 31 426 IPR044440 -
Psa5g6068 915 SUPERFAMILY Periplasmic binding protein-like II 445 808 - -
Psa5g6068 915 PIRSF IGluLR_plant 1 914 IPR017103 -
Psa5g6068 915 Pfam Ligand-gated ion channel 809 837 IPR001320 GO:0015276|GO:0016020
Psa5g6068 915 CDD GluR_Plant 467 808 - -
Psa5g6068 915 SMART GluR_14 468 810 IPR001320 GO:0015276|GO:0016020
Psa5g6068 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Psa5g6068 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Psa5g6068 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Psa5g6068 915 Gene3D - 756 815 - -
Psa5g6068 915 PANTHER GLUTAMATE RECEPTOR 3.7 13 910 - -
Psa5g6068 915 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 910 - -
Psa5g6068 915 Gene3D - 145 422 - -
Psa5g6068 915 Pfam Bacterial extracellular solute-binding proteins, family 3 481 808 IPR001638 -
Psa5g6068 915 Gene3D - 461 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6068 Psa-Chr5 520286701 520291314 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6068 23 912 Ion Channels AT2G32400 54.688 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6068 K05387 - gmx:100796389 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6068 5 520286701 520291314 Psa5g6068 5 520286701 520291314 ECH