Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6054 ATGATGACAAATATTTGGAACAACAAATCCAATGATGATGATGATGATAATATTAACATTGAGTTTGACATTGAGTCATCAAAAGATGATGTTGATGCAAGAACTGGCATGAAGAAAGGACCGTGGTCCCCACAAGAGGACATGGTTTTGATAGAGTACGTGAACAAGCATGGTGAAGGGAATTGGAATTCTGTTCAGAAGAATTCAGGATTGTTAAGATGTGGAAAAAGCTGCAGACTTAGATGGGCCAATCATCTAAGGCCAAATCTAAAGAAAGGTTCATTTTCTGAAGAGGAAGAAAAAATCATCATTCAACTTCATGCTAAGCTTGGAAATAAATGGGCTAGAATGGCTGCTCAGTTACCTGGAAGAACAGATAACGAAATCAAGAACTTTTGGAACACGAGGATGAAAAGGCGTCAAAGAGCGGGTTTACCTCTTTACCCTCCAGAAATCCATGCAGAAGCTATTGCATACAACAATCATATAATGCTTCAGCATGAGCCTTTCTCTTCTTCATCATCATTTTCTTTACTCTTATCTTCATGTTACCCTAAGAAGCTTGATGATCCAAACAATTATGATTATAATCCTCTCCAAAACATCTCAGATTCAGCTTACACCAATCCATGTCCACAATTCAGCTTTTCCAATGATGAAACCCTAGAGATTAATGAAAATCTTGCTTTGAAAAAATCACCTTCACTTTCTCCTTATCCATCTCCATCCTCCAATGTTTTCAACCAAGGTTTTACTCCTCCAAGTGATCATTCACATGATCACCAATATTCTGAAAATTTTAGCTATGATCATCATGGATTCAATGCAGGATCTCTGTATGATTCTGCAACTCCTGCTTCATCTTATGCTAGTGGTGTTAATGATTACTATGAAGTTGCACCGTTATCGTCTGAAGGAAAAAATAGTGGACTTTTGGAGGATCTTGTGATGGAAGGTAGAAGTATTTCAAGCAATGACAAGGGTAAGAGTGTGGACTCATACAAGAGGAAACGCGTGGAGGCTGAAGAATATGAAGATGAAGGAGGCATTGGTTCTTTGGTGTCAGGTTCCATAAAGAAGAAGAAGAGTTTGGATGAGACTCAGAAGAAAGATTTTAGCTTTTCTCAATTGTCAACAGGGAAGAAACCGTTTGTGGAGGATCCTTTAGCTGAGATGAATTCAATGTACGATGATGACTTGGATTGCTTGCTCCACAATTTTCCCTCAGAAATACCAATGCCTGAATGGTACTGTAGAGGAAAAAGCCAAACATTGGGACATGAAACTCAAACTGATCATGCTTCTTCATCATCTGGCCCCACCAATCAAGAATTTGCTTGGACTCTTGGATCAAGTTGGAATAACATGCCTGGCATATGTTAA 1383 0.3868 MMTNIWNNKSNDDDDDNINIEFDIESSKDDVDARTGMKKGPWSPQEDMVLIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEEEEKIIIQLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEIHAEAIAYNNHIMLQHEPFSSSSSFSLLLSSCYPKKLDDPNNYDYNPLQNISDSAYTNPCPQFSFSNDETLEINENLALKKSPSLSPYPSPSSNVFNQGFTPPSDHSHDHQYSENFSYDHHGFNAGSLYDSATPASSYASGVNDYYEVAPLSSEGKNSGLLEDLVMEGRSISSNDKGKSVDSYKRKRVEAEEYEDEGGIGSLVSGSIKKKKSLDETQKKDFSFSQLSTGKKPFVEDPLAEMNSMYDDDLDCLLHNFPSEIPMPEWYCRGKSQTLGHETQTDHASSSSGPTNQEFAWTLGSSWNNMPGIC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6054 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Psa5g6054 460 MobiDBLite consensus disorder prediction 329 345 - -
Psa5g6054 460 SMART sant 38 88 IPR001005 -
Psa5g6054 460 SMART sant 91 139 IPR001005 -
Psa5g6054 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 86 IPR017930 -
Psa5g6054 460 Gene3D - 94 140 - -
Psa5g6054 460 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Psa5g6054 460 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 299 460 - -
Psa5g6054 460 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 273 - -
Psa5g6054 460 MobiDBLite consensus disorder prediction 323 348 - -
Psa5g6054 460 CDD SANT 41 86 IPR001005 -
Psa5g6054 460 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 30 273 - -
Psa5g6054 460 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 299 460 - -
Psa5g6054 460 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Psa5g6054 460 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Psa5g6054 460 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Psa5g6054 460 Gene3D - 38 91 - -
Psa5g6054 460 CDD SANT 94 135 IPR001005 -
Psa5g6054 460 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6054 Psa-Chr5 518886539 518890550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6054 36 160 MYB Transcription Factor Family AT5G06100 76.800 9.51e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6054 Myb_DNA-binding 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6054 K09422 - gmx:100784779 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6054 5 518886539 518890550 Psa5g6054 5 518886539 518890550 ECH