Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6038 ATGTCAATGGATGTGATGGCAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTTGCGGTTAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTTTCGGTTAACATGGGAGCATCACTTCAATCTTTTCCACCTCAACAAGACCCTCAGAAACAGCAGCTTATAAGCTGTCATCAAGAACCAATTAGCAGGAAGGAAGTTGTAGGATCATCATCATCATCTTCTTCAAAATGCAAAGCTTTTCAGCCTCATGAGCAACCTAGGACTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTACCTTCGGCTTATAATCGGTTCATTAAGGAAGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGTTGGATGGTAGCAAGCAAGCAAAGTTGGACCAGGGGGTTGGGGACACTACTCAAAAGTCTAACGGATTCTATTGA 561 0.4296 MSMDVMANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQDPQKQQLISCHQEPISRKEVVGSSSSSSSKCKAFQPHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQGVGDTTQKSNGFY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6038 186 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 186 - -
Psa5g6038 186 Gene3D High mobility group box domain 98 157 IPR036910 -
Psa5g6038 186 SUPERFAMILY HMG-box 99 154 IPR036910 -
Psa5g6038 186 MobiDBLite consensus disorder prediction 81 116 - -
Psa5g6038 186 MobiDBLite consensus disorder prediction 81 97 - -
Psa5g6038 186 PANTHER PROTEIN YABBY 6-RELATED 3 186 IPR006780 GO:0007275
Psa5g6038 186 Pfam YABBY protein 7 161 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6038 Psa-Chr5 517809563 517816634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6038 1 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.625 4.29e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa5g6038 YABBY 7e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6038 K25796 - gmx:100785458 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6038 5 517809563 517816634 Psa7g4675 7 403964167 403966637 PCT