Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6025 ATGGTGCTTCGTCGTAGCCAACGCATTTCCAACGCAAAATCTTCTGGACTAATTTTGAGTAGTTACGTGGAAGAAGATAGTGATTATGAGGAAGAAGAGAGTGACATTGAAGTAATAGAGAACAATGAACCGCCAATGGTTCAGGTTCCGCAGCAGCCACTTCCCATTGATTTAACAGGAAATAAAATGAAGGTAGATGGAAGGAGGTCAAGAAAAAAGGAAAAGCCAGTGTTAATATGGCAAGTGAGGGAAAAGGAGCTAGACATATTTGTTCAAATGATAATGTCACAAGAACAACACATGAACCATAGGGCAAACGATTATGAGAGTGAAATGTTGAATGAAACTGCGGAGGCCTCCTCTGATTTCTCAATTGCCTTGTCCTTGCCAACGGGACTCCAGCGAAATGGATTTGTATTTTCACAACCACCTTTACCATCTTCTTCTGAAGCGTTGCCTTTGATCGAAGGAACTCTTGTCATTTGCCCCGTGGTAGCTATCACTCAGTGGGTCAATGAGATTGACCGATGTACTTTGAAAGGAAGTACCAAGGTTCTAGTTTATCATGGGGCTGACAGAATTAAGAATTGGAAACAGTTCTCCAAGTATGATTTTGTGATAACTTCATACACTATTGTTGAATCTGAGTGCAGGAACATGTCAAATTGGCGTGGGAGAAATTGTGAAGGACCTAGTATTGTTAGACAAGAAAAACGTAAGAAAAATATATCAAATGTTGTGCCAGCCCTACATGCTGTAAAGTGGCAGCGGATCATACTGGATGAGGCACATTATATAAAAGATAAACATTCTAATACCACTCAAGCAGTTTTTGCTTTAGAATCTACATACAAATGGGCATTAAGTGGCACTCCGTTTCAGAACCGTCCTGGAGAGTTGTATCCTCTGATAAGGTTCCTACAGATAAATCCTTATTCCTATTACTTTTGCAAACGCTGTGATTGTAGAGTTCTTCATCATAGGTATGAATTATGTTCAGACTGCTCCCATGGGTCTGGGGATCATTTCAGTTGGTGGAATAAATACATTGCTAAACCAATTGAAAATTCTCGATACAATGATGCTCATGGGAAAGAAGCTATGATATTGCTCAATCACAAAATTTTTAAAAAATTAGTACTTAGGCGCACCAAAATAGGCAGGGCTTCTGATGTTGCACTTCCACCTACAACTGTTTCAGTGAGAAGGGATTTCTTGGATAGAGAAGAGCTCGACTATTATGAAACATTATACAAGGAATTTCAAGCAAAACTTGATAGATATTTTAGAGAAAATACTATGGGGGATCACCGTGTTGAAATCGTTGACCTGATCACACGGCTGCGTCAGGAGTTAAATGCTGAAGATCTGGCAAGTAGTGCAGCTGACAACAAGAAAGTGGATATTGTCATAAGCCAGAAGAAGATCCTGTTGATTAACTTCAACAAGGATGTTAGGATGGACGATGATAAAATCAGCCGGTCTGTTGTTAAGATTAATGTTGACCAATTGGCAGAATTTGCTCATGACCTGAAGGCTGTGGTATTGCACTCAATTGACAGTAGCATCACATGTTTTTCATTATGGACCCTGGTGGAATCCAGCTTTAAGGCTCAGGCTCAGACAGAATTCACGAATAGGGCAATATAA 1650 0.3994 MVLRRSQRISNAKSSGLILSSYVEEDSDYEEEESDIEVIENNEPPMVQVPQQPLPIDLTGNKMKVDGRRSRKKEKPVLIWQVREKELDIFVQMIMSQEQHMNHRANDYESEMLNETAEASSDFSIALSLPTGLQRNGFVFSQPPLPSSSEALPLIEGTLVICPVVAITQWVNEIDRCTLKGSTKVLVYHGADRIKNWKQFSKYDFVITSYTIVESECRNMSNWRGRNCEGPSIVRQEKRKKNISNVVPALHAVKWQRIILDEAHYIKDKHSNTTQAVFALESTYKWALSGTPFQNRPGELYPLIRFLQINPYSYYFCKRCDCRVLHHRYELCSDCSHGSGDHFSWWNKYIAKPIENSRYNDAHGKEAMILLNHKIFKKLVLRRTKIGRASDVALPPTTVSVRRDFLDREELDYYETLYKEFQAKLDRYFRENTMGDHRVEIVDLITRLRQELNAEDLASSAADNKKVDIVISQKKILLINFNKDVRMDDDKISRSVVKINVDQLAEFAHDLKAVVLHSIDSSITCFSLWTLVESSFKAQAQTEFTNRAI* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6025 549 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 249 458 - -
Psa5g6025 549 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 157 229 - -
Psa5g6025 549 SMART ultradead3 101 316 IPR014001 -
Psa5g6025 549 Pfam SNF2-related domain 154 456 IPR000330 GO:0005524|GO:0140658
Psa5g6025 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 310 IPR014001 -
Psa5g6025 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 383 IPR027417 -
Psa5g6025 549 CDD DEXDc_SHPRH-like 124 383 - -
Psa5g6025 549 PANTHER BNAA08G28190D PROTEIN 157 229 - -
Psa5g6025 549 PANTHER BNAA08G28190D PROTEIN 249 458 - -
Psa5g6025 549 Coils Coil 22 42 - -
Psa5g6025 549 Gene3D - 147 403 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6025 Psa-Chr5 516974041 516977689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6025 38 468 RAD5 or RAD16-like Gene Family AT1G05120 40.228 2.68e-109 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g6025 SNF2_N 1.2e-37 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6025 K15083 - gmx:100786366 372.474