Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6024 ATGGTTCAGGTTCCGCAGCAGCCACTTCCCATTGATAACTATAGGGAAAAAGATTATAAGAGTGAAATGTTGAATGAAACTGCGGAGGCCTCCTCTGATTTCATTCTACCTTTGCTTAGATTCCAAAAGGAATGGTTGGCTTGGGCTTTGAATCAGGAACAAATATACAGAGGTGGAGTGCTTGCGGATGAAATGGGAATGGGAAGGACCATTGAAGCAATTGCCCTTGTCCTTGCCAAACGAGAACTCCAACAAAATGGATTTGTATTTTCACAATCACCTTTACCATCTTCTTCTGAAGCGTTGCCATTGATTGAAGGAACTCTTGTCATTTGCCCCGTGGTAGCTATCACTCAGTGGGTCAATGAGATTGACCGATGTACTTTGAAAGGAAGTACCAAGGTTCTAGTTTATCATGGGGCTGACAGAATTAAGAATTGGGAACAGTTCTCCAAGTATGATTTTGTGATCACTTCATACTCTATTGTTGAATCTGAGTGCAGGAATATGTCGAATTGGCGTGACAGAAATTGTGAAGGACCTGGTTTTGTTAGACAAGCAAAACACTCCAAGCAAGTTAAGAAAAATAAATCAAATGCTATGCCAGCTCTACACGCTGTAAAGTGGCAGCGAATCGTACTAGATGAGGCACGCTATATAAAAGATAAACGTTCTAAAACCACTCAAGCAGTTTTTGCTTTAGAATCTACATACAAATGGGCACTAAGTGGCACTCCATTTCAGAACCGTCCTCGAGAGTTGTATACTCTGATAAGGTTCCTACAGATAAATCCTTATTCCTATTACTTTTGCAAACACTGTAATTGTAGAGTTCTTCAGCACAGGTATGAATTATGTTCAGACTGCTCCCATGATTTTCGGGATCATTTCAATTGGTGGAAGAAATACATTGCTAAACCAATTGAATCTTCTCGATCCAATGATATTTGTGGGAAAAAAACTATGATATTGCTCACACACACAATTTTGAAAAACTTGGTACTAAGACGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCAGTGAGAAGGGATTTCTTGGATAGAGAAGAGCTCGACTATTATGAAACATTATACAAGGAATTTCAAGCAAAATATAATAGATATGTTAGAGAAAATACTATGGGGGATCACCGTTTTGAAATCGTTGGCCTAATCACACGGCTGCGTCAGGTAACAAATCATCGATACCTTGTGGAATTTTCTCAAAAAGAGGAGTTAAATGCTGAAGATCTGGCAAGTAGTGCAGCTGACAAACAAGAAAGTGGCATTTGTCATAAGCCAGAAGAAGATCCTGTTGATTTAACTTCCAACAAGGATGTTAGGGATGACGATGATAAAATCATGGTTAAATATTTCAGATCCTCAAGAATTTTAAAAAACATTGAGCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTAGATCTTATATACTACTCTCTGTACAAGTCTGGAGTATCTTGCGTTCTGTTGAATGGAAGCATGTCACGAGCAGCACGGGATGCTGTTGTTAAAAGATTTAATGTTGAACCAAATTGCAGAATTTTGCTCATGACCTTGAAGGCTGGTGGTATTGCACTCAATTTGACAGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAATCCAGCTTTAGAGCTTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTACAAGGGTTGTGAAGTTTGTCATTGCAGACACAGTTGAGGAGAAGATTTTGAAGGTCCTGGAGAAGAAGAGACTAGTTGCTCAAGGGATTTTAGACGGTTCTTCTGAAGCTATGGAGCAATTGTCAGTTTCTGACTTCCAAACTATGTTTGGTAAATGA 1968 0.3918 MVQVPQQPLPIDNYREKDYKSEMLNETAEASSDFILPLLRFQKEWLAWALNQEQIYRGGVLADEMGMGRTIEAIALVLAKRELQQNGFVFSQSPLPSSSEALPLIEGTLVICPVVAITQWVNEIDRCTLKGSTKVLVYHGADRIKNWEQFSKYDFVITSYSIVESECRNMSNWRDRNCEGPGFVRQAKHSKQVKKNKSNAMPALHAVKWQRIVLDEARYIKDKRSKTTQAVFALESTYKWALSGTPFQNRPRELYTLIRFLQINPYSYYFCKHCNCRVLQHRYELCSDCSHDFRDHFNWWKKYIAKPIESSRSNDICGKKTMILLTHTILKNLVLRRTKIGRAADLALPPRIVSVRRDFLDREELDYYETLYKEFQAKYNRYVRENTMGDHRFEIVGLITRLRQVTNHRYLVEFSQKEELNAEDLASSAADKQESGICHKPEEDPVDLTSNKDVRDDDDKIMVKYFRSSRILKNIELENFQTSTKLEALREEIRFMIERDGSAKGIVFSQFTSFLDLIYYSLYKSGVSCVLLNGSMSRAARDAVVKRFNVEPNCRILLMTLKAGGIALNLTVASHVFIMDPWWNPALELQAQDRIHRIGQYKPTRVVKFVIADTVEEKILKVLEKKRLVAQGILDGSSEAMEQLSVSDFQTMFGK* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6024 655 Pfam SNF2-related domain 51 411 IPR000330 GO:0005524|GO:0140658
Psa5g6024 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 337 IPR027417 -
Psa5g6024 655 Coils Coil 472 492 - -
Psa5g6024 655 Gene3D - 10 358 IPR038718 -
Psa5g6024 655 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 264 IPR014001 -
Psa5g6024 655 Pfam Helicase conserved C-terminal domain 485 599 IPR001650 -
Psa5g6024 655 SMART ultradead3 34 270 IPR014001 -
Psa5g6024 655 Gene3D - 359 655 IPR027417 -
Psa5g6024 655 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 645 IPR001650 -
Psa5g6024 655 PANTHER - 17 178 - -
Psa5g6024 655 PANTHER - 445 490 - -
Psa5g6024 655 PANTHER - 184 418 - -
Psa5g6024 655 PANTHER - 492 651 - -
Psa5g6024 655 SMART helicmild6 516 599 IPR001650 -
Psa5g6024 655 CDD SF2_C_SNF 483 610 - -
Psa5g6024 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 654 IPR027417 -
Psa5g6024 655 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 445 490 - -
Psa5g6024 655 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 492 651 - -
Psa5g6024 655 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 184 418 - -
Psa5g6024 655 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 178 - -
Psa5g6024 655 CDD DEXDc_SHPRH-like 38 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6024 Psa-Chr5 516962074 516968353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6024 18 653 RAD5 or RAD16-like Gene Family AT1G05120 50.549 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g6024 SNF2_N 4.7e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6024 K15083 - gmx:100798333 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6024 5 516962074 516968353 Psa5g6024 5 516962074 516968353 ECH