Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6018 ATGGAGATGGAGTGGACTAGAGGCAACATCATCGGACAAGGCTCGTCCGCCACTGTCTACCTCGCCATCTCCCCTCGCTCCTCTGATGTCTCCGCCGTTAAATCGGCGGAGACATCGGTTTCAAACTCAAAACAACTACAGAGAGAACAGAGAATTTTGTCTTCTTTGTCCTCTCCCTACATAGTTAGCTACAAAGGTTGCAACTTCACAAAGGAGAATTACAAGAATTGGTTCAACCTCTTCATGGAGTACATGCCTTTCGGAAATCTCTCCGAGGAGACGCGACGAAACGGTGGCCGGCTTAACGAGCCGACGATGGCACACTACACAAGACAAATTGTGGAAGGACTTGAGTACTTGCATTCAAAAGGTGTTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTGGTGAGAAGGGAGTTAAAATCGGAGACTTTGGTTGTGCAAAGATGGTTGATGAGATTGCGCCGATTGCGGGGACTCCGATGTATATGTCGCCGGAAGCCGCGCGAGGCGAAGAACAAGGTTATCCTTGTGATGTTTGGTCGCTTGGTTGCACTGTTATTGAAATGGCAACTGGTTTTTCGCCTTGGTCCAATGTAGAAGACCCTGTTAATGTTCTGTTTCGTGTTGCATATTGCGATGAAGTTCCGATGATTCCTTGTTTTCTTTCGGAACAAGCAAAGGATTTCTTGAAAAAGTGTTTTGTAAGGGCCTCTAAGGAGAGATGGAGTTGTAGTCAATTGTTGAAGCATCCATTTCTTGAGAAAATTCAAGAATCTGATTCATGTTCGCCGACTAGTATTCTCGAACCGGGCTTTTGGAATTGCGAAGAGGATTCGGAAAGTTTCGTTTTTGATGATTTGGGTAAGATTAGTTTTGAGAATTGTCCTGTTGGTAGGATCAAAAAGCTAGCTTTGTGTTCAAGGGATCCATGTTGGAAATTGGGTGATGAAAATTGGATTATTGCTAGAGGAAATGATGCAGATGCAGAGTCTTCAATTAGTGATGTTAATGATAGAATTAGTAGTGATTATTTTTGTGAGGATTATGTTAATTATAAGATTAGTGATGTTAGTTTTGTAGTTAATAGTTTTGATTTTGAGAGAGACATTGGAAGGTTGATGACAGATTCAACATTAGATTTCTTATAA 1158 0.418 MEMEWTRGNIIGQGSSATVYLAISPRSSDVSAVKSAETSVSNSKQLQREQRILSSLSSPYIVSYKGCNFTKENYKNWFNLFMEYMPFGNLSEETRRNGGRLNEPTMAHYTRQIVEGLEYLHSKGVVHCDIKGSNILVGEKGVKIGDFGCAKMVDEIAPIAGTPMYMSPEAARGEEQGYPCDVWSLGCTVIEMATGFSPWSNVEDPVNVLFRVAYCDEVPMIPCFLSEQAKDFLKKCFVRASKERWSCSQLLKHPFLEKIQESDSCSPTSILEPGFWNCEEDSESFVFDDLGKISFENCPVGRIKKLALCSRDPCWKLGDENWIIARGNDADAESSISDVNDRISSDYFCEDYVNYKISDVSFVVNSFDFERDIGRLMTDSTLDFL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6018 385 CDD STKc_MAPKKK 4 256 - -
Psa5g6018 385 SMART serkin_6 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6018 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa5g6018 385 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Psa5g6018 385 ProSiteProfiles Protein kinase domain profile. 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6018 385 Pfam Protein kinase domain 7 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6018 385 SUPERFAMILY Protein kinase-like (PK-like) 5 267 IPR011009 -
Psa5g6018 385 Gene3D Transferase(Phosphotransferase) domain 1 2 281 - -
Psa5g6018 385 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 349 - -
Psa5g6018 385 PANTHER MAP KINASE KINASE KINASE 3 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6018 Psa-Chr5 516734900 516736347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6018 3 328 MAP Kinase Kinase Kinase AT2G32510 46.067 7.45e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa5g6018 Pkinase 1.1e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6018 5 516734900 516736347 Psa5g6018 5 516734900 516736347 ECH
Psa5g6018 5 516734900 516736347 Psa1g4093 1 330271214 330272403 ECH
Psa5g6018 5 516734900 516736347 Psa7g4658 7 401616366 401618331 ECH