Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6015 ATGGATCCCAACAAGAACAAGAACAACAACATGTCTCCATCCAAAACAATCCCCTTTCAAGTCAACCTTAACTCTGATCATCAAAACAGACCCATCATTCGTGAATTGGATTTCTTCTCTCCAAATAACAACAACAACCATGCTTCTACTTCTGCACCTCCCAATCCTTATATACATGATCATTACACCCCTTCTCCTCCCTTTGAGATGAAAGTTAACACAAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATCAATCAGTGGTGGAAGCTGATATATCAACTAGTTCACAAGACAGAAGACCTAACCTTGAGCTGGTTAATCTTCAAGCTGAGCTTGAGAGAAAGAAGGTGGAGAATCACCGGCTGAGGAACATGTTTGATGAGGCTAAGATGAATTACAACACGCTGAATATGCATCTCATGAGTTTGATGCAAAAGGGGAAGGTAGAGGATTGTAATGAAGAAGAGTTAGAAGAAGAGAAACCAAATGGGAATGGTGGAGTTTTGGTTCGAAGACAATTTATTGATCTTGGATTGGCTAGTAATGATTCTGATGCTGTTGATGAACCAAGAAGTCAAGATCAGTCAAAATCACTTGCGAACAACGTTGATGAAGGTTCCAAGGATGAAGAACTCGTGTTTGATCATGAGAAGAATGAATCTGATCGGGGAAATGATCGAAACGATAGTCCTTCGAATCAAGTTTTAGCTGCTAATAGTAGTCCTCAAAGTAGTGTTGAACAAGCTGAGGCTACCATGAGGAAAGCTAGGGTTTCTGTTCGAGCTCGATCGGAAGCTAATATGATCAATGATGGGTGTCAATGGAGAAAATATGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGTCTATAGGTTGTCCAGTGAGAAAACAGGTACAAAGGTGTGCCGAAGATAAATCAATACTAGTAACAACATACGAAGGAAATCACAATCACTGCTTACCGCCAGCAGCAAAGGAAATGGTACATCAAACATCGTCGGCTGCAAGAATGTTACTCTCGGGTCCAATGACAAGTCCTGACGGACTAATGAACCCGAATTTTCTCACAAGAACAATGTTTCCTTCTTCTTCAAGCATTGCAACAATCTCCGCATCAGCTCCATTTCCAACCATTACATTGGACTTAACTCAATCACCAAATAATCCATTACAGTTCCCTAACCCTAACCTCTCAAACCAGTTCCAGTTTCCTTTCCCTCAGACATTGTTTAATCAGTCAAGATTTTCAGGACTGCAAACATCTCAAGATCCAGAAACTTCTACGTCTCGACAGATGTCGCAGAATCTTGCTGACAAAGTTACTGCTATTGCAAAAGATCCTAACTTCACTGTAGCTTTGGCTGCTGCTCTTACTTCCATTATTAAGGCATTTCCGAACAATGATGATAGTACGGTTGATAATGGTGACAATACAACTGCTAATAACAGTAATGGCAATGTTACATCAAGTAACAATTCCAATGAAAGCAATATAACCAACAATCCCAGTTCTTCAGGAAACTAG 1557 0.4053 MDPNKNKNNNMSPSKTIPFQVNLNSDHQNRPIIRELDFFSPNNNNNHASTSAPPNPYIHDHYTPSPPFEMKVNTSLNLLTTNTSSDQSVVEADISTSSQDRRPNLELVNLQAELERKKVENHRLRNMFDEAKMNYNTLNMHLMSLMQKGKVEDCNEEELEEEKPNGNGGVLVRRQFIDLGLASNDSDAVDEPRSQDQSKSLANNVDEGSKDEELVFDHEKNESDRGNDRNDSPSNQVLAANSSPQSSVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMSIGCPVRKQVQRCAEDKSILVTTYEGNHNHCLPPAAKEMVHQTSSAARMLLSGPMTSPDGLMNPNFLTRTMFPSSSSIATISASAPFPTITLDLTQSPNNPLQFPNPNLSNQFQFPFPQTLFNQSRFSGLQTSQDPETSTSRQMSQNLADKVTAIAKDPNFTVALAAALTSIIKAFPNNDDSTVDNGDNTTANNSNGNVTSSNNSNESNITNNPSSSGN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6015 518 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6015 518 MobiDBLite consensus disorder prediction 483 518 - -
Psa5g6015 518 Coils Coil 107 134 - -
Psa5g6015 518 SUPERFAMILY WRKY DNA-binding domain 264 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g6015 518 MobiDBLite consensus disorder prediction 230 250 - -
Psa5g6015 518 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 501 IPR044810 GO:0003700
Psa5g6015 518 MobiDBLite consensus disorder prediction 205 229 - -
Psa5g6015 518 MobiDBLite consensus disorder prediction 183 250 - -
Psa5g6015 518 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6015 518 Gene3D WRKY domain 256 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g6015 518 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g6015 518 PANTHER OS05G0567200 PROTEIN 13 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6015 Psa-Chr5 516446279 516449131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6015 72 479 WRKY Transcription Factor Family AT1G62300 48.064 1.71e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g6015 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6015 - - cam:101511587 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6015 5 516446279 516449131 Psa5g4053 5 320023329 320025148 ECH
Psa5g6015 5 516446279 516449131 Psa5g6015 5 516446279 516449131 ECH
Psa5g6015 5 516446279 516449131 Psa1g4089 1 330180323 330183676 ECH