Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6002 ATGGATGAAATTGAAATCGATGTTCCTTCTCATTTTCTATGTCCAATTTCCCTCCAACTTATGAAAGATCCTGTCACTGTTTCAACAGGAATAACCTACGACAGAGACAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACATGTCCTGTCACAAAACAAACCTTATTAGAAACCGATCTTAATAACCTTACACCCAACCACACTCTTCGCCGTTTGATTCAATCTTGGTGCACTCTTAATGCTTCTTTTGGTGTTGAGCGTATTCCAACACCAAAATCACCCATTGATAGAACACAGATTCTTAAACTCCTCAATGAAGCAAAGAAATTTCCAGAAACAGATCTCAGTTGTCTCGTAAAGCTTCGTTCTATCGTCGTCGAAAGCGAAAGGAACAAAAAATGCTTGGAATCTGCAGGTGCGGTAGAGTTCTTAGCTTCAACCATGAAGAAGAACTCAAGTTCTCTGAGTGAAGCTGCTATTGAAGTTTTGTTTCATATAAATCCTTCTGAAGTTCGCATTAAGAATCTGATAAACAACGAAAGTATTCAATTTATTGAGTCATTGTTTCATGTGTTGAAGCTTGGGAGCTGCCAATCTAGAGGCTATGCAACAATGCTATTGAAATCGGCTTTCGAAGTATGCGATCCCATACAATTAATCGGCGTAAAAAAGGCGATATTCGAAGAGGTGACGAGAGTGCTAGTTGATAAGATTTCACAACAAGCTACAAAAGCTGCATTGAAGTTACTTGTGGAGCTTTTACCCTGGGGAAGAAACCGAATAAAAGCGGTCGAAGGCGGCGCGGTTTTAGTCCTCGTCGAGCTTCTTTTCGATGTTTCCGAAAGAAAGGTCTGTGAATTGATTTTGATAGGTTTAGATCAACTTTGTGGCTGTGCTGAAGGTCGTGCGGAGATGTTGAATCATGGAGCAGGAATTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGTGTTAGAATTTTGAGTTCTATTTGTAGGTATTCTGCAAATTCTAGAGTTTTACATGAAATGTTGCAAGTTGGAGGTGTTTCAAAGTTGTGTTTGGTGCTTCAAGTTGATAGTAATTTTAAGACAAAAGAGAAGGCTAAGGAGATTCTCAAATTGCATTCTGTTGTTTGGAAAAATTCTACTTGTATTCCTGTTCCTTTGTTGTCTTCTTATCCATGA 1212 0.3837 MDEIEIDVPSHFLCPISLQLMKDPVTVSTGITYDRDNIEKWLFSFQNKTCPVTKQTLLETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLLNEAKKFPETDLSCLVKLRSIVVESERNKKCLESAGAVEFLASTMKKNSSSLSEAAIEVLFHINPSEVRIKNLINNESIQFIESLFHVLKLGSCQSRGYATMLLKSAFEVCDPIQLIGVKKAIFEEVTRVLVDKISQQATKAALKLLVELLPWGRNRIKAVEGGAVLVLVELLFDVSERKVCELILIGLDQLCGCAEGRAEMLNHGAGIAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLQVGGVSKLCLVLQVDSNFKTKEKAKEILKLHSVVWKNSTCIPVPLLSSYP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6002 403 ProSiteProfiles U-box domain profile. 7 85 IPR003613 GO:0004842|GO:0016567
Psa5g6002 403 PANTHER OS11G0573500 PROTEIN 7 403 - -
Psa5g6002 403 Gene3D - 99 391 IPR011989 -
Psa5g6002 403 SUPERFAMILY RING/U-box 2 82 - -
Psa5g6002 403 PANTHER WDSAM1 PROTEIN 7 403 IPR045185 GO:0061630
Psa5g6002 403 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Psa5g6002 403 CDD RING-Ubox_PUB 12 55 IPR045210 -
Psa5g6002 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Psa5g6002 403 SUPERFAMILY ARM repeat 103 382 IPR016024 -
Psa5g6002 403 SMART Ubox_2 11 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6002 Psa-Chr5 515916435 515918233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6002 1 403 U-box Gene Family AT2G35930 55.746 8.61e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6002 - - gmx:100778012 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6002 5 515916435 515918233 Psa5g6002 5 515916435 515918233 ECH