Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5999 ATGGGTGAAACCGAAATTCCTCAATTTTTTGTTTGTCCCATTTCACTTCAAATCATGAAAGAACCTGTTACAACAATCACAGGAATAACATACAACAGAGAAAGCATCGAACACTGGTTACTCACCTCAAAAAACTGCACATGTCCAATTACCAAACAACCCTTGCCAAGAAGCTCAGAGTTCTTAACACCAAACCACACTCTTCAGAGATTAATCCAATCATGGCACTCAACAAATTCAGCACCCTCGAAAACCGACAAGTCCAAATTTGAAAAACTTGTTAAGAATCTTGATCAATCGGCAATAGAAAAACTACACGTTCTTGCTTTAGAAGACGAAGGAAATAGAACATGCATGGTTGAAGCAGGAGTAGCAAAAGCCATTATTCAAAAAGTGATTATAAAGAGCTTTTTCAAGCAAGGTAAAACAATATGCCTCGAAGAAGCTTTGAGAATTCTTCGTTTACTTTGGCCTTTAGCCATATCCAATAACAAGAACAACATAGTTGATGACAACTTTGACTTAGTCAACTCTTTGACTTTGATTTTGCAACTTCACATTGATAACAAAAACTTCAAGGTAATAAACGAAGCAATGCTTGTGTTGAAACTCGTTCTTGAGGTGAAAAGTTCAAACTCTTTGTTGAATTTACACGTTGAATTCTTTAGAGAAATAGTTAAACTACTTAGTATCAGAAACAAAGAACTTTCTAAACAAGCTATAAAATCTGCATTGCTTGTGTTATTACAAACATGTCCTTTAGGTAGAAACCGAATGAAGATGGTTGAAGCTGAAGCAGTGACGGAACTCATTGATCTTGCACTTGAGAGACAAGAGAAGAATCAAACGGAGCTTATATTCATGCTTCTTGCGGACTTGTGTTCGTGTGCTGATGGAAGAGCACAGTTTGTGAGACATGCAGGAGGAATAGCAGTGGTTTCTAAGAGAACATTGAGGGTTTCATCGACAACGGACGATAGAGCGCTTCAAATATTTTGTTTGATTTCTAAGTATTGTGGAACAAATGAGTTTGTTCAAGAGATGTTAAGGGTTGGTGGTGTTTCGAAACTTTGTATGGTTATGCAAGCAGATTGTGCTTCTTATTTGAAGGAAAAAGCTAGAGGTGTTCTTAGGTTGCATTCAAATGTATGGAATAATTCTCCTTGTATTCAAGTTTATTTGTTGACTAGACACCAAAGGTGA 1203 0.3674 MGETEIPQFFVCPISLQIMKEPVTTITGITYNRESIEHWLLTSKNCTCPITKQPLPRSSEFLTPNHTLQRLIQSWHSTNSAPSKTDKSKFEKLVKNLDQSAIEKLHVLALEDEGNRTCMVEAGVAKAIIQKVIIKSFFKQGKTICLEEALRILRLLWPLAISNNKNNIVDDNFDLVNSLTLILQLHIDNKNFKVINEAMLVLKLVLEVKSSNSLLNLHVEFFREIVKLLSIRNKELSKQAIKSALLVLLQTCPLGRNRMKMVEAEAVTELIDLALERQEKNQTELIFMLLADLCSCADGRAQFVRHAGGIAVVSKRTLRVSSTTDDRALQIFCLISKYCGTNEFVQEMLRVGGVSKLCMVMQADCASYLKEKARGVLRLHSNVWNNSPCIQVYLLTRHQR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5999 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Psa5g5999 400 SUPERFAMILY ARM repeat 100 378 IPR016024 -
Psa5g5999 400 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Psa5g5999 400 Gene3D - 92 391 IPR011989 -
Psa5g5999 400 SUPERFAMILY RING/U-box 4 80 - -
Psa5g5999 400 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Psa5g5999 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 397 - -
Psa5g5999 400 CDD RING-Ubox_PUB 10 53 IPR045210 -
Psa5g5999 400 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Psa5g5999 400 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5999 Psa-Chr5 515776466 515778000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5999 3 390 U-box Gene Family AT2G35930 38.177 2.94e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5999 - - gmx:100787419 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5999 5 515776466 515778000 Psa5g5999 5 515776466 515778000 ECH