Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5997 ATGGGTTTTTTGTTGAAAGAAGTTTTGAAGACTTTGTGCGGTAGGAACCAGTGGTCTTATGCTGTTTTCTGGAAGATTGGTTGCAACAATTCTAAGCTACTGATTTGGGAAGAATGTTATTATGAACCATTTTCACGTCCTTCCGCTCATGGTATTGTTGGGATGTCTAATGTGCCTAATCGGAATGAGGAAGGATGCTGGTTTTCTTCTGAGTTTCAATCATCCCCGCTAGGAAATCAAGAGGATAGAGTCTCTTCTTTGATTAACAAATTGACAGTAAATAATTTAGTCGTTGTTGCAGGTGAAGGTATAATTGGACGCACTGCATTTACCAATAGTCATGAGTGGATTCTCTTGAATAATTTTGCTAAAGATGCATATCCACCTGAGGTGTATGCTGAAATGCATCTCCAATTTTCAGCTGGAATGCAGACAGTAGCAGTTATTCCGGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTGCTTGCCTATAATGGAGAATATGGGGTTTGTCCATGAAGTAAAGAGCCTTATTTTGCAACTTGGGTGTATTCCTAATGCCCTTCTATCCGAGGACTATTCGACTAAATTTTCAAATGAAAGACTTGATGGACGTGCTACTTCTGGTGTGCCTGTGTCTGTTGATTCGTCAGTCATTACCTCCAATTCCACTCCTTCCATAGTTAATGGCTCCAATCACCGAAATTATTCATCTCACTCACTTTGTCCGTTAACGGGTAAAAATAATAATCGTCAGGAAAGGGTTGTCGTGGCTGAAGTAATACCTTCGAATTTCGATTCAAGCCTACAGCAGCATTCTGTTTCATATAATGCAGGATCTGAATTCAATAAGTTAGCTGGTTCTGTGCCGTTTGGCCAATCAGGGACAAGTGATTACGTTAATCCTCGTATTCATGTGTCAAGTTCCGTAAACATTTCTCAACTAAAAACAGATAGAAGCCATAACACTAGCCATAATGTGAGTTCTAGCAGTACTTCGTCACTAAGAGGAATCCCGGTACATGGTGGAATGAATAATCTTTTGAGGACTCCAGAATGTTCAGACCAGAAGATTCTTCCCGAAGTTTCAAACTTTTCTTCAACAGATCAAAAGATAGATTATAACATTCTTCAGACTCCTAACATTCCCTCTTTTATCGTTGAGGAGCATGTGCCAAATAGTTGTAATATCTCAGGTTTTGTCCGTGATTGCATTCAAAAAGACGGTACTGGTCGATCTGCGATGAATCCTAAACACAAAGAAGCTTGTGCTCAACATTCATCAGGTGGTGACGACTTGTTTGATATTTTAGGTGTGGATTTTAAAAACGAACTTCTGAAAGGACACTGGAATGAACTGTTTGCTGATGAACCAGATTATAATGCTGAAAATATGGTTAAAAAGGAAACATGTTTGAACATAGAAGGTTCAAATTCTGATTATTATTCGGTTAACAAATCAATGTCCGAAAGTGGCATTTTCTCCGGGATATCAGCAGACAACCTCTTGGATGCCGTGGTCTCAAAGGCCAAACCGACTTTGAAACCGAATTCCGATGACTTGTCTTGCAGAACAACGTTGACCGGGAATAGTACCGCCTCTATTCCCTCTCCTCTCCATAGGAAGTTTATGTCTAGTAATTTCCAAGGGGGGTTGTTTGACATATCTAAGAACGGAGATAAAATGGCTGCTTTAGAAACTAGTTCTCTAAGGTCTGGTTTTAGCAAGGACGATGTTGGAAACTGTTCTCAAACTACTACTTTATGTGGTTCTCAACTTAGTTCATGGTTGGAGAATGGTGGCAATCTTAAGGGCGAAAATAGTGTTTCAACTGGATACTCTAAGCGCCCGAATGAAGCTTGCAAATCTAATCGCAAAAGGCTTAAACCAGGAGAGAATCCAAGGCCTCGACCTAAAGATCGCCAAATGATTCAAGATCGTGTCAAAGAGTTACGAGAGATTGTTCCAAATGGAGCAAAATGTAGCATAGATGCGCTGCTGGAACGGACCATTAAGCATATGCTTTTCTTGCAAAGTGTGACAAAGCATGCGGACAAGCTGAAAAAGACCGGGGAGTCTAAGATTATTAGTAAGGAAGGTGGACTGGTTTTGAAAGATAACTTTGAGGGAGGAGCTACATGGGCATATGAGGTTGGCTCCCGATCAATGGTTTGTCCGATTATAGTCGAAGATTTGAATACGCCTCGTCAGATGTTAGTGGAGATGCTTTGCGAGGAACGGGGTTTCTTTCTGGAAATTGCCGACTTAATCAAAGGATTAGGCTTAACCATCTTGAAAGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCACGTTTTGTTGTCGAGGCAAACAGGGACGTAACGAGGATGGAAATATTTATGTCACTCGTTCGTCTTCTGGAGCAAACGATGAAGGACAATGCGTCTTCATCCAATGCCATTGATGACATGTTAGGTTACAACTCTTTACCCCAGAAGGCCTAA 2490 0.4104 MGFLLKEVLKTLCGRNQWSYAVFWKIGCNNSKLLIWEECYYEPFSRPSAHGIVGMSNVPNRNEEGCWFSSEFQSSPLGNQEDRVSSLINKLTVNNLVVVAGEGIIGRTAFTNSHEWILLNNFAKDAYPPEVYAEMHLQFSAGMQTVAVIPVLPHGVVQLGSCLPIMENMGFVHEVKSLILQLGCIPNALLSEDYSTKFSNERLDGRATSGVPVSVDSSVITSNSTPSIVNGSNHRNYSSHSLCPLTGKNNNRQERVVVAEVIPSNFDSSLQQHSVSYNAGSEFNKLAGSVPFGQSGTSDYVNPRIHVSSSVNISQLKTDRSHNTSHNVSSSSTSSLRGIPVHGGMNNLLRTPECSDQKILPEVSNFSSTDQKIDYNILQTPNIPSFIVEEHVPNSCNISGFVRDCIQKDGTGRSAMNPKHKEACAQHSSGGDDLFDILGVDFKNELLKGHWNELFADEPDYNAENMVKKETCLNIEGSNSDYYSVNKSMSESGIFSGISADNLLDAVVSKAKPTLKPNSDDLSCRTTLTGNSTASIPSPLHRKFMSSNFQGGLFDISKNGDKMAALETSSLRSGFSKDDVGNCSQTTTLCGSQLSSWLENGGNLKGENSVSTGYSKRPNEACKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKKTGESKIISKEGGLVLKDNFEGGATWAYEVGSRSMVCPIIVEDLNTPRQMLVEMLCEERGFFLEIADLIKGLGLTILKGVMEAHNDKIWARFVVEANRDVTRMEIFMSLVRLLEQTMKDNASSSNAIDDMLGYNSLPQKA* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5997 829 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 178 IPR025610 -
Psa5g5997 829 MobiDBLite consensus disorder prediction 620 643 - -
Psa5g5997 829 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 629 678 IPR011598 GO:0046983
Psa5g5997 829 CDD bHLH_AtLHW_like 633 702 - -
Psa5g5997 829 MobiDBLite consensus disorder prediction 608 643 - -
Psa5g5997 829 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 246 - -
Psa5g5997 829 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 353 829 - -
Psa5g5997 829 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 250 351 - -
Psa5g5997 829 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 353 829 IPR043561 GO:0003700|GO:0006355
Psa5g5997 829 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 250 351 IPR043561 GO:0003700|GO:0006355
Psa5g5997 829 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 246 IPR043561 GO:0003700|GO:0006355
Psa5g5997 829 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5997 Psa-Chr5 515557210 515563009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5997 425 826 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.367 6.10e-112 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5997 - - cam:101492357 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5997 5 515557210 515563009 Psa5g5997 5 515557210 515563009 ECH
Psa5g5997 5 515557210 515563009 Psa7g4706 7 407355606 407361081 PCT