Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5992 ATGGTTTCTAGAATGGATCAGTACGAGATCATGGAACAGATCGGTCGCGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAGGCGGAGAACAAAAGATACGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACTGAACGGTGTAGAAGATCTGCTTATCAAGAGATGGATCTTATTGCTCGGATTAAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATATTGTGAAGGTGGGGACATAGCGGCATTGATGAAAAAATCAAAAGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAATGGATTACTCAAATACTGTTGGCGGTAGAATACCTGCATTCAAAATTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCATGATGTTCGCCTGGGGGACTTTGGGCTTGCTAAGACACTAAAAGCTGATGATTTGACTTCTTCGGTTGTAGGAACTCCCAACTACATGTGCCCTGAACTATTTGCCGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGACGGATTGATAAGCAAGATAAACCGTCCATCTATTGCTACTTTGCCTCCCTGTTATTCCCCATCCTTGAAAATACTGATAAAAGGGATGCTGAGGAAAAACCCTGAGCATCGTCCAACAGCATCCGCAATCTTAAAGCACCCTTATTTGCAGCCTTATGCACATCAATATTGTTCGCCTCTCTGTCCTCCAGCAGCAACCTCTTCTCCTGAAAAGCCAATTTCTGCTGTCCATGATCCTCGGAAAAATATGGTACAAAGTAAAAACAGAAATAGTTTGAGAGGTGACAAAGGTTATTTGATGTTAAATGAGCAAGACATTGCAAAAGCTTCACCAAAGGGTGATGAAAAAATCACCGAGGTAGACATCTCATCGACTGATGATGATGGGTCTAAGCTTCTAATGCATGTCGGAAAACGAAATAGATCCAGCAATTTCAATGCCAAAACATATAAACAGGAGGTTATGAAGAATGTAATGATGGCACCAAAACATGAAAAAGTTAGAGAGACAAGCCATCCAATGAGAGGCAATGGGGTGATGGCCGGTGGACCAGTACACAAAATAAATACCGAGACATCGTCTAAATTGCCCAAACCTGATTTTAGTGTTAGTGGTTTGAAGCGTCATTTAGATGTGCCAACTACCGCACCTTCAAAAGCAACCCTTAATTCTGCCAAACAAATCCAGAGGTCACATACTTCTAAACATCAGTTACCAATGGTAGAATCTACCCCCAAAACAAAACCTCAACATAAGGTAACATTGCCATCTGGTCCTATTAAACAAGTAGCAGCAGAAGGTGGAGTTCCTGGAAAGCTAAAACGAAAAACTCTTCCAAGTCTTCTTAAACCCTCATGTCTGGGAAGTATAAGGCTGGCTGAAAATGATATCCCAAATGCAGCAAATGATACAGGAAGGTTATATCCAAATAAAATAGCTCAAGAGCCTGAGATGAGCCATCTTCAGCTGACTAATAGTCATCTACCTCATGTTTTAAGAGAGCCTTTGAAGGCTTTTGAATGTAGCACCAATGGAATGCAAACAGACAGCAACAATTCTGTCTCATCATCAGTCTCTATTCAAGAATTTGAACGTTCTGACTTTGCAACCGCTTTTATTGACATGAGTGATCCAACACTTCCTGAACATGAGAGTTTAAATCTCACTGAAAAAATGGAATCACGTCCAGACAGCAATGGACCTGCTGAAAATTTGTCTCGTGAAACCTCTTCCTTTACATCAAATTTTCAGAATTCCATTATTGGTAATGAGAAAGCAAGTCCCAAATTAACTCTGGGTCACCCAAATCAACATTTTGAGATAATGTACGCTTCTGATGACAGTTTTCTCATAAACCAAACAACTATATCTGCTGCCTGTGAGTGTGATGATCTCTCGGCCGAAGTCAAACAAGAAATCAAAGCCCTTCAAGATATTTCTGGAGAACGGTCTATTTGTGAAGTTAGTCTAGTAAGTGTGCCAAATAATAAGCCTCATAATGTTCACGAGCAGAAACTTAGGGGCATATCGACTCGCGATGATAAATTCATGGTGAGGGAAGGAATGTCTTCAGTGGCTGAAACTTCTCTGGTTATATCTAGCAAAATTTCAAGCCAAAAAGTTATACAAGAAGAGAAGGAAATGGTTTTACAGAATCTAGCAACTGAAAGGCCAGCTTCTGGCCATCTACCCTCAGCTTTTGGTGATATCATCCATGTTATACGCCATAGCAGTTACCGTATGGGAAGTGAGCTTCCAGTGAAGGAATCAGTAGAGGTGGGAGATACAAATGTAGATGTTGGTAAACTTATCAACATTATAAAGGATGATTTAGAAATAAGAAACGCAGGAACTCTAAGGTCCCTTAAATCTTCAAATTGCTCTGAAGCTACCACTTATAATTCGGGAATTAGAAACTTGAGCTTGAAGTCAAGTATTTCCGACCATCCTGGTGTTGAAAAGCAAGATGCAAAAAACCCCGAGTCTCTAGTTTCAAAACCAGATTCCGCTAAATATACCAAATATAGCCCTCAAACAGCCGAAGAGGAAATGCCAGAAAAAGAATCTGTGGATGTTAAATCTTCCAAGCAGAGAGCTGAAGCACTTGAAGGCCTATTAGAATTGTGTTCAGATTTGCTGCAACAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAACCCTTTGGAAAAGATAAGGTGTCCCCAAGGGAGACAGCTATTTGGTTGGCCAAAAGTCTAAAAGGATTGATGTTTGAGGAAAGTGGGAGACGTGATTAA 2916 0.4078 MVSRMDQYEIMEQIGRGAFGAAILVNHKAENKRYVLKKIRLARQTERCRRSAYQEMDLIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDIAALMKKSKGVYFPEEKLCKWITQILLAVEYLHSKFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELFADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRPSIATLPPCYSPSLKILIKGMLRKNPEHRPTASAILKHPYLQPYAHQYCSPLCPPAATSSPEKPISAVHDPRKNMVQSKNRNSLRGDKGYLMLNEQDIAKASPKGDEKITEVDISSTDDDGSKLLMHVGKRNRSSNFNAKTYKQEVMKNVMMAPKHEKVRETSHPMRGNGVMAGGPVHKINTETSSKLPKPDFSVSGLKRHLDVPTTAPSKATLNSAKQIQRSHTSKHQLPMVESTPKTKPQHKVTLPSGPIKQVAAEGGVPGKLKRKTLPSLLKPSCLGSIRLAENDIPNAANDTGRLYPNKIAQEPEMSHLQLTNSHLPHVLREPLKAFECSTNGMQTDSNNSVSSSVSIQEFERSDFATAFIDMSDPTLPEHESLNLTEKMESRPDSNGPAENLSRETSSFTSNFQNSIIGNEKASPKLTLGHPNQHFEIMYASDDSFLINQTTISAACECDDLSAEVKQEIKALQDISGERSICEVSLVSVPNNKPHNVHEQKLRGISTRDDKFMVREGMSSVAETSLVISSKISSQKVIQEEKEMVLQNLATERPASGHLPSAFGDIIHVIRHSSYRMGSELPVKESVEVGDTNVDVGKLINIIKDDLEIRNAGTLRSLKSSNCSEATTYNSGIRNLSLKSSISDHPGVEKQDAKNPESLVSKPDSAKYTKYSPQTAEEEMPEKESVDVKSSKQRAEALEGLLELCSDLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMFEESGRRD* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5992 971 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Psa5g5992 971 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5992 971 MobiDBLite consensus disorder prediction 861 906 - -
Psa5g5992 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Psa5g5992 971 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 955 - -
Psa5g5992 971 MobiDBLite consensus disorder prediction 429 464 - -
Psa5g5992 971 CDD STKc_Nek 7 262 - -
Psa5g5992 971 MobiDBLite consensus disorder prediction 603 623 - -
Psa5g5992 971 MobiDBLite consensus disorder prediction 425 481 - -
Psa5g5992 971 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Psa5g5992 971 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5992 971 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5992 971 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 955 - -
Psa5g5992 971 SUPERFAMILY Protein kinase-like (PK-like) 4 288 IPR011009 -
Psa5g5992 971 Gene3D Transferase(Phosphotransferase) domain 1 90 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5992 Psa-Chr5 515444514 515451602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5992 6 263 MAP Kinase Kinase Kinase AT3G13530 31.923 1.92e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa5g5992 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5992 K08857 - gmx:100780141 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5992 5 515444514 515451602 Psa7g4273 7 347058408 347062789 PCT