Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5973 ATGGTTTTCTTAACACAGATTTGGCTACACGGAAACAAGTTTTCGGGTACAATTCCGAAGAACATTGGAAATCTCATTTCCTTGAAGGAACTCAACCTTAACAGTAATCAATTTGTTGGGTTGATTCCACAGTCCTTAGCAGAAATGAAACTCGAGTTACTTGTTTTGAACAATAACATGCTAATGGGTCCGATACCGATGTTTAAAGCTGCAAATTTTACTTATGATGATAATCTCTTTTGCCAAACTGAGCCTGGACTTGAATGTTCTCAACAAGTTACATCACTGTTGGATTTTCTGGATAATCTGAATTATCCGTCGTTTCTGATTTCCGATTGGTCGGGTAATAGACCGTGCACAAGTAGCACAGGATCGTGGTTTGGATTGAGCTGCAATTCATCTGAGGTATCTTTGATTAATCTACCAAGACATAAGCTTAATGGTAGCTTAAGTCCTTCACTTGCTAAGTTAGAATCACTTCTCGAAATTAGGCTTGCTGGAAATAATATATCTGGCCTAATTCCGAGTGATTTTACTAAATTGAAATCCTTGAGGTTGTTGGATTTGAGTGACAATAATATTGAATCTCCTTTGCCGACTTTTCGTGATGGTGTGAAGGTTATTACCGTCGGTAACCCTTTTGTTAATAATCAAACTGGAAGGAGTGTTAGTCCTGTTATTAGCGGCCCGATTTCGGAAAACAACTCGACTCACTCTCCATCTTCACATAATGAGACAGTTCCAAGCTCACATCACAGAAGATTCAAGACAGTAGCAACATTGGTTGGAATTGCAGTGTTTGCAGTTGTAGTTTTTTTTATTGTTTATCTCTTTTTATGTTTCTTTAAGAAGGATAAAAAATCCTTGGATGCTCCGAGTTCCATTGTGGTTCATCCTCGAGATTCGTCTGATCCATACAATGTAGTTAAAATTGCGGTTTCAAGCAACAACTCTGGAAGCTTAATAGAAAAGACTGGGACAAGTTCTCTGAATAACTTAAGTTGTGAAAGTAAAAACTCTCACCTGATTGAGGTTGGAAACCATGTCATATCAGTGCAAGTGCTACGCAAGGTTACTAACGATTTTGCATCGGAAAATGAGCTAGGCCGTGGTGGATTTGGAACTGTTTACAAAGGGGAATTAGAAGATGGAACCAATATAGCAGTGAAGAGAATGGAGAATGGAGTTATTGGAAATAAGGCAGTGGAAGAGTTTCAAGCTGAAATCGATGTTCTTTCTAAGGTTCGTCATCGACATTTGGTATCTCTTTTGGGGCATTCCATTGAAGGAAATGAAAGACTTTTAGTTTATGAATATATGCCACTTGGTGCTCTAAGTCAGCATCTTTTTCATTGGAAAAAATTGGATTTAAAGCCTTTGTCTTGGTCACAAAGGCTTGTAATAGCACTAGATGTTGCGAGAGCGATGGAATATCTTCACGGTCTTACTCGCGAGACCTTTATTCACAGAGATCTCAAGTCTTCTAATATTCTGCTAGGTGACGATTTTCGTGCAAAAGTTTCGGATTTCGGTCTTGTGAAGCTTGCGCCAGATGGTGAAAAATCTGTAGTAACAAAACTTGCTGGGACATTCGGTTACTTAGCCCCGGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTATTCAGCTACGGTGTGGTCTTAATGGAGCTTCTAACGGGACTAACGGCCCTTGACGAGAGCCGGTCAGAGGAAATCCGATACTTGGCGGAATGGTTTTGGCGAGTTAAATCGAACAATGAAAAGATTATGGCTGGTATTGATCCAGCTTTGGAACGAAATGAAGAAACATGTGAAAGTATAACTATTGTAGCAGAACTTGCTGGACATTGCACTGCTAGGGAACCATACCATAGGCCAGATATGAGTCATGCTGTCAATGTACTATCAGCAGTAGTGGAGAAATGGCGACCGGTTACCGATGAATTCGACGACTCCTATTCTGCCGTTGACGATACTCGACCACTTCCTCAAATGTTGAAAATTTGGAAGGATGCAGAAAACGGCGAGTTTAGTTATAGTACTTCTTCTGCTAGTCTTGAAGACAGTAAAGGGAGTATTGCAGTGAGGCCTACTGGATTTGCTGACTCCTTCACTTCTGCTGATGCTAGATGA 2142 0.4024 MVFLTQIWLHGNKFSGTIPKNIGNLISLKELNLNSNQFVGLIPQSLAEMKLELLVLNNNMLMGPIPMFKAANFTYDDNLFCQTEPGLECSQQVTSLLDFLDNLNYPSFLISDWSGNRPCTSSTGSWFGLSCNSSEVSLINLPRHKLNGSLSPSLAKLESLLEIRLAGNNISGLIPSDFTKLKSLRLLDLSDNNIESPLPTFRDGVKVITVGNPFVNNQTGRSVSPVISGPISENNSTHSPSSHNETVPSSHHRRFKTVATLVGIAVFAVVVFFIVYLFLCFFKKDKKSLDAPSSIVVHPRDSSDPYNVVKIAVSSNNSGSLIEKTGTSSLNNLSCESKNSHLIEVGNHVISVQVLRKVTNDFASENELGRGGFGTVYKGELEDGTNIAVKRMENGVIGNKAVEEFQAEIDVLSKVRHRHLVSLLGHSIEGNERLLVYEYMPLGALSQHLFHWKKLDLKPLSWSQRLVIALDVARAMEYLHGLTRETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRSEEIRYLAEWFWRVKSNNEKIMAGIDPALERNEETCESITIVAELAGHCTAREPYHRPDMSHAVNVLSAVVEKWRPVTDEFDDSYSAVDDTRPLPQMLKIWKDAENGEFSYSTSSASLEDSKGSIAVRPTGFADSFTSADAR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5973 713 Pfam Leucine Rich Repeat 27 47 IPR001611 GO:0005515
Psa5g5973 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Psa5g5973 713 SUPERFAMILY L domain-like 3 200 - -
Psa5g5973 713 MobiDBLite consensus disorder prediction 231 250 - -
Psa5g5973 713 PANTHER OSJNBA0070M12.3 PROTEIN 1 713 - -
Psa5g5973 713 Gene3D Ribonuclease Inhibitor 92 218 IPR032675 -
Psa5g5973 713 CDD STKc_IRAK 368 638 - -
Psa5g5973 713 MobiDBLite consensus disorder prediction 231 246 - -
Psa5g5973 713 SMART LRR_typ_2 25 48 IPR003591 -
Psa5g5973 713 SMART LRR_typ_2 157 180 IPR003591 -
Psa5g5973 713 SMART LRR_typ_2 181 203 IPR003591 -
Psa5g5973 713 SUPERFAMILY Protein kinase-like (PK-like) 341 638 IPR011009 -
Psa5g5973 713 SMART serkin_6 362 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5973 713 Gene3D Transferase(Phosphotransferase) domain 1 440 662 - -
Psa5g5973 713 Pfam Protein tyrosine and serine/threonine kinase 365 637 IPR001245 GO:0004672|GO:0006468
Psa5g5973 713 PANTHER OSJNBA0070M12.3 PROTEIN 1 713 - -
Psa5g5973 713 Gene3D Phosphorylase Kinase; domain 1 324 439 - -
Psa5g5973 713 ProSiteProfiles Protein kinase domain profile. 362 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5973 713 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Psa5g5973 713 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5973 Psa-Chr5 514140203 514144032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5973 237 633 Trihelix Transcription Factor Family AT1G68690 38.821 8.55e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Psa5g5973 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5973 - - cam:101493565 1122.07