Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5963 ATGGAAATGGTTTCTAAAGAACCTCATATGTCTATTGCCGCTTCTTCTATGTTTCCTGGTTTCAGATTCTGTCCTACAGACGAAGAGTTGATTTCTTATTACCTCAGGAAGAAGTTGGATGGTCATGAAGAAAGTGTTCAAGTTATTTCTGAAGTTGAGCTTTGTACATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCGGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGACGGAAGTATCCAAATGGTTCACAGAGTAAAAGAGCTACTGAATGTGGATATTGGAAAGCCACTGGAAAAGAGCGTAACGTGAAATCAGGTCCTAACGTCATAGGCACGAAGCGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACAGAATGGATTATGCATGAGTACTGCATCAGTGACAGGTCTCCGGATTCTTTGGTCGTTTGTCGCCTCAAGAGGAACACCGAGTTCCGTCTGAACGATACTTCGAATAGAGCCTCGTCAAGTCAAATAAACCAAGTACATTCACATGAAAGTGACTGCGCTGTCTCAGAAGGAGCTACTGATCAAAGGGAAATAGGCACACATGAACAAGAAAAGGAGGTTGATGGTAGTTCCAAGCGGGGAAGCAGCAGTTATGGTTCTCCTTCAATGGAACAAAATGATTCCGTGTCTGAATCTAATCAGCGACCAGCTACTGACGCTACTTTGACAGACTCTTCGGGCCACCTAAAGATGGATGAAGAAGATTGTTATGCGGAGATACTAAAGAACGATATCATAAAACTAGATGAATCATCAATGTCTCAAGCGGCTCAAACAAGAGCAAATGACCTTCCACAGTCTCATCCATGCCAAGGCACCGCTCAACGGAGAATACGATTAAGGGTTCCAAAATCAACGCATGCTCAACAAGGCGTTCGTTTCACCAGAACAATGCACGAGTCAAAGAGTAGTTTCTTTGACAGTGTGAGCAACTGTTTGATGATATTTGCTTTCTTTGTTTTCACTCTCATGGCTATATTTTTCTGGTCTTTATTGGATGGTCACGAACAAGGTAGAAATATTGTAGGAAAATTTCCGGAGTAG 1104 0.4266 MEMVSKEPHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCTYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGPNVIGTKRTLVFHLGRAPKGERTEWIMHEYCISDRSPDSLVVCRLKRNTEFRLNDTSNRASSSQINQVHSHESDCAVSEGATDQREIGTHEQEKEVDGSSKRGSSSYGSPSMEQNDSVSESNQRPATDATLTDSSGHLKMDEEDCYAEILKNDIIKLDESSMSQAAQTRANDLPQSHPCQGTAQRRIRLRVPKSTHAQQGVRFTRTMHESKSSFFDSVSNCLMIFAFFVFTLMAIFFWSLLDGHEQGRNIVGKFPE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5963 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 359 - -
Psa5g5963 367 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Psa5g5963 367 Gene3D NAC domain 26 183 IPR036093 GO:0003677|GO:0006355
Psa5g5963 367 MobiDBLite consensus disorder prediction 167 184 - -
Psa5g5963 367 MobiDBLite consensus disorder prediction 167 248 - -
Psa5g5963 367 MobiDBLite consensus disorder prediction 187 211 - -
Psa5g5963 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 11 359 - -
Psa5g5963 367 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Psa5g5963 367 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Psa5g5963 367 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5963 Psa-Chr5 513871837 513874927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5963 4 280 NAC Transcription Factor Family AT2G27300 52.708 2.06e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g5963 NAM 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5963 - - mtr:MTR_2g086880 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5963 5 513871837 513874927 Psa5g5963 5 513871837 513874927 ECH