Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5958 ATGGAAGAACCACAACCTGGTTTTCGTTTCTATCCAACCGAACAAGAGTTAGTTGGCTTCTATCTACACAACCAGCTAGAAGGACAAAAGCAAGAAGACATCAATAAAGTCATCCCTGTCATTGATATCAATGGCAAAGAGCCATGGACTCTTCCAACATTTGCAGGAAAACGATGTCGTGGAGAAACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAAAGAGAGATGAGAGGAGGAAGACCGAGCAGAACAACATCTTCTGGATATTGGAAAGCTACTGGTTCTCCTAGCTATGTTTACTCTTCTAACAACAAAGCGATTGGGATAAAGAAAAGCATGGTGTTTTACGAAGGGAAAGCTCCTTCTGGAAGGAAAACTAAATGGAAGATGCATGAATATAAAGCCATTGAACACTTTGACTCTTCTAACACAAACCCTCCTAAGTTACGACACGAATTCAGCTTGTGTCGCATTTATGTGATATCGGGAAGTTTTAGTTCATTCTATCGTCGACCATTAGAGAGACCAAGCATGGAGTTACAACTTGATCATAGTGCTTCAACAAGTGCTCAACAAGTGGTATCAGAGATTGATGAATCAAATCTGCATGCAACTTCCCGTTCGGAAGGAGTAGGAAGAGATCATGATGGTGTTCTTATGGGAGGGTCAAGTGGTACAAATTGGAATGATGTAGCAGATAATGGGGTTGATGAATCTGAACCTCTTTGGGAATGGGAACAACTAAATTGGATCTAA 759 0.4097 MEEPQPGFRFYPTEQELVGFYLHNQLEGQKQEDINKVIPVIDINGKEPWTLPTFAGKRCRGETEQWFFFSPRQEREMRGGRPSRTTSSGYWKATGSPSYVYSSNNKAIGIKKSMVFYEGKAPSGRKTKWKMHEYKAIEHFDSSNTNPPKLRHEFSLCRIYVISGSFSSFYRRPLERPSMELQLDHSASTSAQQVVSEIDESNLHATSRSEGVGRDHDGVLMGGSSGTNWNDVADNGVDESEPLWEWEQLNWI* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5958 252 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 252 - -
Psa5g5958 252 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Psa5g5958 252 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Psa5g5958 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 252 - -
Psa5g5958 252 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Psa5g5958 252 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5958 Psa-Chr5 513624579 513625877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5958 2 251 NAC Transcription Factor Family AT5G22380 52.569 3.89e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g5958 NAM 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5958 - - gmx:100784960 348.977