Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5942 ACAATAACAACCAATGGTCAAGAGGTTGATGCTGGTACAAGTGTAAAAATTGATGCTGATGTTCTTCATTCAAAGAATCGACAATATGTTGCTGCTTCGGAGACAATAACAGCCAATAATCATGAGATTGTGGCTGATACAAGTAGTCGTAAAATAACTATTAAAATAAAACTAAGTGATCGATCTCTAAGAGTTGTTTATGGAAATTCTAACGAGACAGTTACCGAGGAATTCAACAATCCTGATATAAAGAATAACGAGACAGCTACCGAGGAATTCAACAATCCTGATGTAAAGAATAATGAGACAAGTACTGAGGAATTTGAGAATCCTGATGTAAAGAATAACAAGACAACTGTCGAGGAACTCAACAATCCTAATACAAAGAAAAATAATGAGATGGTTGACGAGGAATCTTCGTTTGCCGAGAGTTACAAGACGAATATCAAGAAAATAAAGGCAAATAAGAAAAGATCAAACAAGCCTTCAAATAAAGGAAAGAAGAAAACCAATAACAATGGTAACATTAGTCCCCAGCCGGAAATAGAAGAACCCGGACTTCCTTTCGAATTCAAAGAAAAGATTGAACAAATGGGAGGCATTGAGGTGAAGTTTGTGATCCAGAAGGAACTAACAAATAGTGATGTGACGCAAAACAGTGGTCGTCTCTCCATCCCAAAAGGAAGCGTTAAAGAGAGTTTTTTGACACCAGATGAGGAATCATACTTGGATTATGAGCGTAATAAAAAAGAGAAGATTACTGGTATGTGTGTATCGATGCTGGATCACAATCTTAACCTTTGGGATGAAATGTGCTTGAAGAAGTGGAAAATGGAAACTTCTGAAGTCTACAACATCACAGAAGGATGGAACGTACTTGTAGCAGAAAACGATTGGAAAAAAGACGAGAAGGTGTTGGTGCAACTTTGGTCTTTCAGATGCAACCACAAGCTCTATTTTGCACTCGTCAAGCTTTAG 978 0.3732 TITTNGQEVDAGTSVKIDADVLHSKNRQYVAASETITANNHEIVADTSSRKITIKIKLSDRSLRVVYGNSNETVTEEFNNPDIKNNETATEEFNNPDVKNNETSTEEFENPDVKNNKTTVEELNNPNTKKNNEMVDEESSFAESYKTNIKKIKANKKRSNKPSNKGKKKTNNNGNISPQPEIEEPGLPFEFKEKIEQMGGIEVKFVIQKELTNSDVTQNSGRLSIPKGSVKESFLTPDEESYLDYERNKKEKITGMCVSMLDHNLNLWDEMCLKKWKMETSEVYNITEGWNVLVAENDWKKDEKVLVQLWSFRCNHKLYFALVKL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5942 325 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 66 325 - -
Psa5g5942 325 MobiDBLite consensus disorder prediction 151 165 - -
Psa5g5942 325 MobiDBLite consensus disorder prediction 102 116 - -
Psa5g5942 325 Pfam B3 domain-containing protein At2g31720-like 200 295 IPR005508 GO:0003677
Psa5g5942 325 MobiDBLite consensus disorder prediction 89 186 - -
Psa5g5942 325 Gene3D - 199 323 IPR015300 -
Psa5g5942 325 SUPERFAMILY DNA-binding pseudobarrel domain 206 316 IPR015300 -
Psa5g5942 325 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 66 325 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5942 Psa-Chr5 512828588 512829676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5942 191 322 B3 DNA Binding Superfamily AT1G05930 27.612 2.78e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5942 - - mtr:MTR_5g092880 181.415