Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5940 ATGGCACCGAAGAAGGAGAAGGCACCACCACCGTCGTCAAAGCCGGCGAAATCCGGAGGAGGAAAACAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTCAACAACATGGTCTTGTTTGACCAAGGTACCTACGATAAGCTTCTCACCGAAGCTCCCAAGTACAAACTCATCACTCCGTCGGTTCTTTCCGATCGTCTTAGGGTCAATGGATCTTTGGCACGTCGTGCAATCAAAGACCTAATGGCAAGAGGTTTGATTAGGTTGGTTTCTGCTCATGCTAGCCAACAGATTTACACCAGAGCCACTAATACATAA 327 0.4709 MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRVNGSLARRAIKDLMARGLIRLVSAHASQQIYTRATNT* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5940 108 PANTHER 40S RIBOSOMAL PROTEIN S25 2 108 IPR004977 -
Psa5g5940 108 Gene3D - 21 108 - -
Psa5g5940 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Psa5g5940 108 PANTHER BNAA04G12260D PROTEIN 2 108 - -
Psa5g5940 108 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5940 Psa-Chr5 512822662 512824085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5940 1 108 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 86.111 2.50e-54 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5940 K02975 - egr:104454095 156.762