Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5923 ATGAAGTATTTTTTTTTTGAATTTGTTACTTATGGACCGGCCCATTACTCCTTACCCAGTCACCCAACCCAATTAAAAAACATAAAAACAGAAAACCTAATATCTTCTCCTTCGTGCGCCGCTCCATCTCTTTTCACTCTTCCTCTCTTTGCCGGTATAAGATTTATCGTTGCCAAGTCTCTGGTATCGAAGATGAGTAAGCTTCAGAGTGATGCTGTGAGGGAAGCTATTACCGGAATCATGGCTGATTCCAAGGAGAAAAACCGGAAATTTGTGGAGACTATTGAACTCCAGATTGGACTTAAGAACTACGATCCTCAAAAGGATAAGCGTTTCAGTGGTTCTGTCAAATTGCCTCACATCCCTAGACCCAAGATGAGAATTTGCATGCTTGGTGATGCCCAGCATGTTGAGGAGGCTGAGAAAATTGGACTGGACTGGATGGATGTCGAAGCTTTGAAGAAGCTGAACAAAAATAAGAAACTGGTGAAGAAGTTGGCAAAGAAGCACCATGCTTTTTTAGCTTCTGAAGCTGTTATCAAGCAGATTCCCCGTTTGTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTTCCTACACTTGTTTCCCACCAAGAATCTCTTGAAGCCAAGGTTAATGAGACTAAGGCTATGGTCAAGTTCCAGCTTAAGAAAGTGCTTTGCATGGGAGTAGCTGTTGGAAATGTCAGTATGGATGAAAAACAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTCGTGTCCTTATTGAAGAAGAATTGGCAAAATGTTAGGTGCTTGTATTTGAAGAGCTCCATGGGCAAATCTTACCGTGTCTTCTAA 843 0.4176 MKYFFFEFVTYGPAHYSLPSHPTQLKNIKTENLISSPSCAAPSLFTLPLFAGIRFIVAKSLVSKMSKLQSDAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKHHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5923 280 Gene3D - 85 275 - -
Psa5g5923 280 CDD Ribosomal_L1 73 279 IPR028364 -
Psa5g5923 280 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 66 278 - -
Psa5g5923 280 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 66 278 - -
Psa5g5923 280 ProSitePatterns Ribosomal protein L1 signature. 180 199 IPR023673 -
Psa5g5923 280 SUPERFAMILY Ribosomal protein L1 67 280 IPR023674 -
Psa5g5923 280 Gene3D - 129 218 IPR016095 -
Psa5g5923 280 Pfam Ribosomal protein L1p/L10e family 86 274 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5923 Psa-Chr5 511668927 511672048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5923 65 280 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 87.963 6.88e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5923 K02865 - gmx:100808580 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5923 5 511668927 511672048 Psa5g5923 5 511668927 511672048 ECH