Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5920 ATGTATCATCATCATCACCAAGCAAAAAATATTCACTCTTCTTCAAGAATGTCAATACCATCTGAAAGACACATGTTTCTTCAAACAGGAAATGGATCTAGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTCAACCAGTTAGGTGGAGCTGACAAAGCTACTCCAAAAACAGTGATGAAACTCATGGGAATTCCGGGGCTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCCACAATAATAACGTGACACACAAAATAAACACACATTCGGCTTCGGGAACGGATGAGAGACTTTCTGATCAAACCAATGGAACTCACATCAATAAATTAACACTTGGACCACAGCCTAATAACAACAACAAAGATTTACACATAAGCGAGGCGCTGCAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACATTTGCAGCTTAGGATAGAGGCACAAGGAAAATACCTTCAATCGGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAACTTAGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTTTCGGAGCTTGTATCAAAAGTATCCTCACAGTGTCTAAATTCAACATTTTCAGAAATGAAGGAGTTACAAGGTTTTTGTCCTCAAACAATACAAATCACGAACCAACCAAACGACGGCTCAATGGACAGTAGTTGCTTAACATCGAGCGAACGATCACAGAAGGAACAAGAGATCATTCAAAATGGAGGGTTTGGTTTAAGACACTTCAACAACAACAATAACAATCATGTGTTCATGGAAAGAAAAGAACAACAATTAACAGAAGCAGCGGCTTCTATGCAAAACCTTAGAAACACTGAAGTATTAAAATGGTGTGTTGATGAAGTGAAAAAGAACAGTACTTTTCTCACCCCTTTAGAAAGAAATCATGGAAACTTGTCTATGAACATTGGAGTTGAACAAAATCACTCAGATGTTGGTGAGTTTCAACACAGAAACACTGCAAGAACAGAAACAATGAAATCAGTGGATGATAATAACAAGATTCAACAACCTTCTAATTACTTTTCAGCTTCAAGATTGGATTTAAACAGTCGTGGAGATAACAATGAAGGTGCTACAAGCTGTAAGCAACTTGATTTGAATAGGTTCAGTTGGAATTGA 1257 0.3795 MYHHHHQAKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSHNNNVTHKINTHSASGTDERLSDQTNGTHINKLTLGPQPNNNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQTIQITNQPNDGSMDSSCLTSSERSQKEQEIIQNGGFGLRHFNNNNNNHVFMERKEQQLTEAAASMQNLRNTEVLKWCVDEVKKNSTFLTPLERNHGNLSMNIGVEQNHSDVGEFQHRNTARTETMKSVDDNNKIQQPSNYFSASRLDLNSRGDNNEGATSCKQLDLNRFSWN* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5920 418 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Psa5g5920 418 Coils Coil 156 176 - -
Psa5g5920 418 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Psa5g5920 418 PANTHER MYB-RELATED PROTEIN 2 4 418 - -
Psa5g5920 418 Coils Coil 297 317 - -
Psa5g5920 418 Gene3D - 44 102 - -
Psa5g5920 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Psa5g5920 418 MobiDBLite consensus disorder prediction 366 385 - -
Psa5g5920 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 418 IPR044848 GO:0003700
Psa5g5920 418 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Psa5g5920 418 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5920 Psa-Chr5 511567510 511569893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5920 77 418 G2-like Transcription Factor Family AT3G04030 50.000 1.85e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa5g5920 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5920 - - gmx:100810396 550.821